Factsheet for VIT_17s0000g04330.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18550.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62967	Soybean	nucleus	63.34	77.74
KRH56713	Soybean	cytosol, plastid	73.06	75.96
KRH03839	Soybean	nucleus	72.93	75.0
Solyc03g114380.2.1	Tomato	cytosol	76.22	74.45
PGSC0003DMT400062969	Potato	cytosol	76.74	72.91
GSMUA_Achr6P13660_001	Banana	cytosol	63.07	70.38
AT1G18550.1	Thale cress	nucleus	67.02	70.34
CDY26149	Canola	nucleus	64.91	68.71
CDY19223	Canola	nucleus	64.78	68.47
Bra025894.1-P	Field mustard	nucleus	62.29	67.62
Zm00001d042644_P001	Maize	cytosol	27.99	67.41
Zm00001d048931_P001	Maize	nucleus	28.52	62.0
Os01t0605500-00	Rice	plastid	61.63	60.44
TraesCS3D01G218300.1	Wheat	plastid	61.24	59.97
HORVU3Hr1G052930.1	Barley	plastid	60.58	59.95
TraesCS3B01G246600.1	Wheat	plastid	61.1	59.62
TraesCS3A01G214700.1	Wheat	plastid	60.71	59.08
Zm00001d044420_P001	Maize	mitochondrion	59.4	57.8
EES03243	Sorghum	mitochondrion	58.87	57.51
VIT_07s0205g00140.t01	Wine grape	cytosol	25.89	25.52
VIT_11s0016g03960.t01	Wine grape	cytosol	21.42	23.87
VIT_09s0002g04480.t01	Wine grape	mitochondrion	21.42	22.73
VIT_05s0020g01200.t01	Wine grape	cytosol	23.78	22.21
VIT_00s0160g00140.t01	Wine grape	extracellular	4.2	21.77
VIT_08s0032g01060.t01	Wine grape	cytosol	9.2	21.54
VIT_09s0054g00130.t01	Wine grape	cytosol	11.04	21.27
VIT_03s0132g00430.t01	Wine grape	cytosol	13.27	21.26
VIT_08s0007g00340.t01	Wine grape	plastid	16.82	19.42
VIT_10s0042g00380.t01	Wine grape	cytosol	5.26	19.42
VIT_19s0015g01710.t01	Wine grape	cytosol	8.94	18.99
VIT_16s0050g00670.t01	Wine grape	plastid	13.8	16.33
VIT_06s0009g02690.t01	Wine grape	nucleus	2.76	11.54

Protein Annotations

EntrezGene:100259414	wikigene:100259414	MapMan:20.1.3.7	Gene3D:3.40.850.10	ProteinID:CCB43184	ProteinID:CCB43184.1
ncoils:Coil	UniProt:F6GTH5	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003774
GO:GO:0003777	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005871	GO:GO:0005874	GO:GO:0007018
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	InterPro:IPR001752
InterPro:IPR036961	InterPro:Kinesin-like_fam	InterPro:Kinesin_motor_CS	InterPro:Kinesin_motor_dom	InterPro:Kinesin_motor_dom_sf	EntrezGene:LOC100259414
wikigene:LOC100259414	InterPro:P-loop_NTPase	PFAM:PF00225	PRINTS:PR00380	ScanProsite:PS00411	PFscan:PS50067
PANTHER:PTHR24115	PANTHER:PTHR24115:SF557	SMART:SM00129	SUPFAM:SSF52540	TIGR:TC66278	TIGR:TC68616
UniParc:UPI000198507F	ArrayExpress:VIT_17s0000g04330	EnsemblPlantsGene:VIT_17s0000g04330	EnsemblPlants:VIT_17s0000g04330.t01	unigene:Vvi.14903	RefSeq:XP_002272451
RefSeq:XP_002272451.1	SEG:seg	:	:	:	:

Description

Kinesin-like protein [Source:UniProtKB/TrEMBL;Acc:F6GTH5]

Coordinates

chr17:+:4545262..4549609

Molecular Weight (calculated)

84387.2 Da

IEP (calculated)

10.395

GRAVY (calculated)

-0.553

Length

761 amino acids

Sequence
(BLAST)

001: MPVSTRSQIF EQNESNPDHR TRPGNRQDET RIGLPSRNPH HGLKEKMKAL TLLYEQQKQA SMALKNPSSK PQDQRFSTHP SVELLNSIKA EENKPKLGNV
101: MKENTLPNST ITRTFVLPLP PVDDAKENVI AGVDRIVGFS CPRRAPVSNN VARKLSMVAS EPRGIGGTKN VQELEAISER PGIGSRILVF VRLRPMAKKE
201: KEAGSRCCVR IVNRRDLYLT EFATENDYLR LKRLRGRHFA FDASFPDSAT QQEVYSTTTA ELVEAVLQGR NGSVFCYGAT GAGKTYTMLG TVENPGVMVL
301: AIKDLFTKIR QRSCDGNHVV HLSYLEVYNE TVRDLLAPGR PLVLREDKQG IVAAGLTQYR AYSTDEVMAL LQQGNLNRTT EPTRVNETSS RSHAILQVVV
401: EYKIKDASMN IINRVGKLSL IDLAGSERAL ATDQRTLRSL EGANINRSLL ALSSCINALV EGKKHIPYRN SKLTQLLKDS LGGACNTVMI ANISPSNLSF
501: GETQNTLHWA DRAKEIRNKA CDTNEEIQQL PESEADQAKL LLELQKENRE LRVQLARQQQ KVLTLQAQSL AANCSPTPSS VTSLLSPPSS IQPNEKRKPR
601: SSFLAGNCFT PESKRKGAEE TVRELQRTVK ALEAEMERMK KDHVFQLKQK DDFIRDLSRK SGKPSEGVVV GQGVKRVVTR ASLRPKEPTG GELKSPSHRF
701: LSPAPTAKKR SFWDITTANS PSVATLNGRK TRSHVISEPA AAPSMLLQPG FHSSKANALK R

Best Arabidopsis Sequence Match ( AT1G18550.1 )
(BLAST)

001: MPVSTRSKVM KQERNEQENT NLNLPLRNPH QGLKEKMRAL TLLYEQQKRA SFSLRNPNHN QSPKPEDQRF KTQLLDSSKK GDRFHRLDGK DSTFVEEDTK
101: ENNVFEADRI FGVSSVPVKP SGVIRKLSMG NGARNVSEAE KLESLNASVS RILVFVRLRP MGKKERENGS RCCVKVLNKR DVYLTEFTNE NDYLRLKRLR
201: VRHFTFDSSF PETTTQQEVY STTTGDLVEA VLEGRNGSVF CYGATGAGKT YTMLGTMENP GVMVLAIKDL FAKVRQRSLD GNHVVHLSYL EVYNETVRDL
301: LSPGRPLILR EDKQGIVAAG LTQYRAYSTD EVMALLQRGN QNRTTEPTRC NETSSRSHAI LQVIVEYKTR DASMNIISRV GKLSLIDLAG SERALATDQR
401: TLRSLEGANI NRSLLALSSC INALVEGKKH IPYRNSKLTQ LLKDSLGGSC NTVMIANISP SSQSFGETQN TLHWADRAKE IRVKECEVNE EVVQVGEEEG
501: ADQAKLLLEL QKENSELRVQ LAKQQQKLLT LQAENIAAAN NNNNISLTPP SISSLMTPPS ALTAQQKKKP RHSLLSGTCF TPESLKRTKA EEAVKELQLT
601: VKALKMEMER MKREHGLQMK KQKDELMKDL CSRKSEKTPE RCKETRRIVT RGSLRPKEKE KELKSPSHRF ASPVAAAKKR SFWDITVANT SPALDRRKTR
701: SHGLVHQEAP SKLLQPGFAR PHMKH

Arabidopsis Description

KIN8AKinesin-like protein KIN-8A [Source:UniProtKB/Swiss-Prot;Acc:F4ICA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.