CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 5
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98502
KRG98507
KRH46360
KRH46364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18550.1	KRG98502	AT4G26630.1	25387881
AT1G18550.1	KRG98507	AT4G26630.1	25387881
AT1G18550.1	KRH46360	AT4G26630.1	25387881
AT1G18550.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56713	Soybean	cytosol, plastid	93.65	94.67
KRH62967	Soybean	nucleus	66.22	79.03
VIT_17s0000g04330.t01	Wine grape	cytosol	75.0	72.93
Solyc03g114380.2.1	Tomato	cytosol	69.86	66.37
Zm00001d042644_P001	Maize	cytosol	28.11	65.82
GSMUA_Achr6P13660_001	Banana	cytosol	60.54	65.69
AT1G18550.1	Thale cress	nucleus	63.78	65.1
PGSC0003DMT400062969	Potato	cytosol	70.41	65.04
CDY19223	Canola	nucleus	63.11	64.86
CDY26149	Canola	nucleus	62.7	64.53
Bra025894.1-P	Field mustard	nucleus	60.27	63.62
Zm00001d048931_P001	Maize	nucleus	29.59	62.57
Os01t0605500-00	Rice	plastid	62.16	59.28
HORVU3Hr1G052930.1	Barley	plastid	61.08	58.78
TraesCS3D01G218300.1	Wheat	plastid	61.49	58.56
TraesCS3B01G246600.1	Wheat	plastid	61.35	58.21
TraesCS3A01G214700.1	Wheat	plastid	61.35	58.06
EES03243	Sorghum	mitochondrion	60.14	57.12
Zm00001d044420_P001	Maize	mitochondrion	60.14	56.91
KRH44359	Soybean	cytosol	21.89	24.04
KRH47037	Soybean	cytosol	21.76	23.89
KRH09867	Soybean	cytosol	21.76	22.97
KRH23459	Soybean	cytosol	21.62	22.82
KRH48398	Soybean	cytosol	21.08	22.54
KRH39281	Soybean	cytosol	20.54	22.45
KRG93660	Soybean	mitochondrion	8.24	21.94
KRH50824	Soybean	cytosol	22.43	20.39
KRH02264	Soybean	cytosol	22.43	20.37
KRG99933	Soybean	plastid	17.57	20.25
KRH49096	Soybean	plastid	17.57	20.25
KRH12061	Soybean	cytosol	21.76	18.46
KRH37102	Soybean	cytosol	21.62	18.31
KRH38442	Soybean	cytosol	14.19	15.28
KRH08928	Soybean	cytosol	14.32	14.76

Protein Annotations

EntrezGene:100806591	MapMan:20.1.3.7	Gene3D:3.40.850.10	EMBL:ACUP02010364	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G123400
GO:GO:0000166	GO:GO:0003674	GO:GO:0003774	GO:GO:0003777	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005871	GO:GO:0005874	GO:GO:0007018	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016787	GO:GO:0016887	UniProt:I1MUH9	InterPro:IPR001752	InterPro:IPR036961	EnsemblPlants:KRH03839
ProteinID:KRH03839	ProteinID:KRH03839.1	InterPro:Kinesin-like_fam	InterPro:Kinesin_motor_CS	InterPro:Kinesin_motor_dom	InterPro:Kinesin_motor_dom_sf
InterPro:P-loop_NTPase	PFAM:PF00225	PRINTS:PR00380	ScanProsite:PS00411	PFscan:PS50067	PANTHER:PTHR24115
PANTHER:PTHR24115:SF557	SMART:SM00129	SUPFAM:SSF52540	UniParc:UPI00023D4E5F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:9835330..9839888

Molecular Weight (calculated)

81710.4 Da

IEP (calculated)

10.367

GRAVY (calculated)

-0.590

Length

740 amino acids

Sequence
(BLAST)

001: MPVSTRSQIS VSNNNGENEN EVNPSSTTAT RMRNPHHGLK EKLKTLTLLY EQQKQASASL KNASFTFKPP PPSEKAVMRE NTMPNSTITR TFVLPQPPSS
101: NDNNNDEDAK ENVIVGADRI VAFSCPRKTM KANNNNVSVS QSATVARKLS MGPVRVEAEK GGKVGSSRIM VFVRVRPMNK KEKEAGSRCC ISVVNRRDVY
201: LTEFANENDY LRLNRLRGRH FTFDAAFPDS ATQQEVYSTS TSELVEAVLQ GRNGSVFCYG ATGAGKTYTM LGTMENPGVM VLAIKDLFSK IRQRSCDGNH
301: VVHLSYLEVY NETVRDLLSP GRPLVLREDK QGIVAAGLTQ YRAYSTDEVM ALLQQGNQNR TTEPTRANET SSRSHAILQV VVEYRVRDAA MNIINRVGKL
401: SLIDLAGSER ALATDQRTLR SLEGANINRS LLALSSCINS LVEGKKHIPY RNSKLTQLLK DSLGGTCNTV MIANISPSNL SFGETQNTVH WADRAKEIRA
501: KVSDANEDQL PVPEIETDQA KLVLELQKEN RELRIQLAQH QQKLLTLQAQ SLASHSSPTP PPSAGPLSTP LTSAQPIEKR RTRSSFLAGT CFTPETKQKG
601: AELTIKTLQR TVKTLEAEIE KMRKDHSLQL KQKDDLIREL SQKGGKQALA TGELGKGVVT RSSIRPKEPN NSEMKSPSQR FRSPAPTAKK RSFWDITTTN
701: SPSVTTVNGR KTRSHVLAEP AAPPPSMLLQ PGFARQKPNI

Best Arabidopsis Sequence Match ( AT1G18550.1 )
(BLAST)

001: MPVSTRSKVM KQERNEQENT NLNLPLRNPH QGLKEKMRAL TLLYEQQKRA SFSLRNPNHN QSPKPEDQRF KTQLLDSSKK GDRFHRLDGK DSTFVEEDTK
101: ENNVFEADRI FGVSSVPVKP SGVIRKLSMG NGARNVSEAE KLESLNASVS RILVFVRLRP MGKKERENGS RCCVKVLNKR DVYLTEFTNE NDYLRLKRLR
201: VRHFTFDSSF PETTTQQEVY STTTGDLVEA VLEGRNGSVF CYGATGAGKT YTMLGTMENP GVMVLAIKDL FAKVRQRSLD GNHVVHLSYL EVYNETVRDL
301: LSPGRPLILR EDKQGIVAAG LTQYRAYSTD EVMALLQRGN QNRTTEPTRC NETSSRSHAI LQVIVEYKTR DASMNIISRV GKLSLIDLAG SERALATDQR
401: TLRSLEGANI NRSLLALSSC INALVEGKKH IPYRNSKLTQ LLKDSLGGSC NTVMIANISP SSQSFGETQN TLHWADRAKE IRVKECEVNE EVVQVGEEEG
501: ADQAKLLLEL QKENSELRVQ LAKQQQKLLT LQAENIAAAN NNNNISLTPP SISSLMTPPS ALTAQQKKKP RHSLLSGTCF TPESLKRTKA EEAVKELQLT
601: VKALKMEMER MKREHGLQMK KQKDELMKDL CSRKSEKTPE RCKETRRIVT RGSLRPKEKE KELKSPSHRF ASPVAAAKKR SFWDITVANT SPALDRRKTR
701: SHGLVHQEAP SKLLQPGFAR PHMKH

Arabidopsis Description

KIN8AKinesin-like protein KIN-8A [Source:UniProtKB/Swiss-Prot;Acc:F4ICA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.