Factsheet for PGSC0003DMT400080229

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g074900.1.1	Tomato	cytosol, plasma membrane, plastid	93.05	53.08
PGSC0003DMT400016783	Potato	mitochondrion	47.3	33.93
Bra005660.1-P	Field mustard	plasma membrane	45.56	30.03
PGSC0003DMT400071263	Potato	cytosol	44.21	28.34
CDY61605	Canola	plasma membrane	48.46	26.39
CDY11169	Canola	plasma membrane	50.0	26.16
AT5G37450.2	Thale cress	plasma membrane	48.84	25.74
PGSC0003DMT400049974	Potato	plastid	16.8	19.91
PGSC0003DMT400021662	Potato	plasma membrane	35.33	18.98
PGSC0003DMT400047023	Potato	plasma membrane	34.17	18.69
PGSC0003DMT400071814	Potato	plasma membrane	18.15	18.15
PGSC0003DMT400047024	Potato	plasma membrane	29.34	17.92
PGSC0003DMT400047464	Potato	cytosol	17.18	16.04

Protein Annotations

Gene3D:1.10.510.10	Gene3D:3.30.200.20	Gene3D:3.80.10.10	MapMan:50.2.7	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_dom_sf	UniProt:M1D359	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400031228
PGSC:PGSC0003DMG400031228	EnsemblPlants:PGSC0003DMT400080229	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27003
PANTHER:PTHR27003:SF36	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF52058	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI000294D113	SEG:seg	:

Description

LRR receptor-like serine/threonine-protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400031228]

Coordinates

chr10:-:48702246..48709698

Molecular Weight (calculated)

57400.0 Da

IEP (calculated)

8.669

GRAVY (calculated)

-0.150

Length

518 amino acids

Sequence
(BLAST)

001: MLNGSIPSNF SVLPNLQRLS LNNNRLSGFV PTTIWENKTF SPGAKLRLNF QRNFLSDISG ILDPPPNVDI MLYGNPVCGN ANERQITQFC KSRDGGEEYG
101: GLNNSIPSCA AQLPCDVDFE HVPALMDGCF CAAPFGVGLR LRSPSISDFP PHYSDFEQWI TKSVNLNDYQ LQIDSVSWQS GPRLRFFLKF FPPRANDSGT
201: NDFGKFNDSE IVRIANKFAF FNLTGSDIFG PYDLLNFTAM AYNSVLFPPL GGERSRKNRG TVVGIVLGSI FAAAVLLMAL IFVLFKMRRR LHVSKDQPLP
301: KFPMRIEGVK AMGFKELEAA TNNFSSTTEI GQGGYGKVYK GTLAEGTIVA IKRAQQGSLQ GEREFYTEIE LLSRVHHRNL VSLVGYCNEG SEQMLVYEFM
401: PNGSLHDLLK ARYGECLSLG TRLYIALGAA RGILYLHTEA NPPIIHRDVK ANNILLDSKF TAKVSDFGIS KLAPLPDAET SGHVSTVVKG TPVRLYSSYM
501: LKPAIEKLEN RNEIRSAT

Best Arabidopsis Sequence Match ( AT1G06840.1 )
(BLAST)

001: MFSTHHVSRL LIPLLFFFLF CCFSSTFAQD DITNPVEVRA LRVIKESLND PVHRLRNWKH GDPCNSNWTG VVCFNSTLDD GYLHVSELQL FSMNLSGNLS
101: PELGRLSRLT ILSFMWNKIT GSIPKEIGNI KSLELLLLNG NLLNGNLPEE LGFLPNLDRI QIDENRISGP LPKSFANLNK TKHFHMNNNS ISGQIPPELG
201: SLPSIVHILL DNNNLSGYLP PELSNMPRLL ILQLDNNHFD GTTIPQSYGN MSKLLKMSLR NCSLQGPVPD LSSIPNLGYL DLSQNQLNGS IPAGKLSDSI
301: TTIDLSNNSL TGTIPTNFSG LPRLQKLSLA NNALSGSIPS RIWQERELNS TESIIVDLRN NGFSNISGRS DLRPNVTVWL QGNPLCSDGN LLRLCGPITE
401: EDINQGSTNS NTTICSDCPP PYEFSPEPLR RCFCAAPLLV GYRLKSPGFS DFVPYRSEFE QYITSGLSLN LYQLRLDSFQ WQKGPRLRMY LKFFPVFGSN
501: ANNSFIFNRS EVRRIRGMFT GWNIRDEDLF GPYELMNFTL LDVYRDVFPS ASPSGLSNGA VAGIVLGSVA AAVTLTAIIA LIIMRKRMRG YSAVARRKRS
601: SKASLKIEGV KSFTYAELAL ATDNFNSSTQ IGQGGYGKVY KGTLGSGTVV AIKRAQEGSL QGEKEFLTEI ELLSRLHHRN LVSLLGFCDE EGEQMLVYEY
701: MENGTLRDNI SVKLKEPLDF AMRLRIALGS AKGILYLHTE ANPPIFHRDI KASNILLDSR FTAKVADFGL SRLAPVPDME GISPQHVSTV VKGTPGYLDP
801: EYFLTHQLTD KSDVYSLGVV LLELFTGMQP ITHGKNIVRE INIAYESGSI LSTVDKRMSS VPDECLEKFA TLALRCCREE TDARPSMAEV VRELEIIWEL
901: MPESHVAKTA DLSETMTHPS SSSNSSIMKH HYTSMDVSGS DLVSGVAPSV APR

Arabidopsis Description

Probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Source:UniProtKB/Swiss-Prot;Acc:C0LGD7]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.