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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400066996 Potato cytosol 91.33 91.53
PGSC0003DMT400066993 Potato cytosol, plasma membrane 92.79 90.35
Solyc10g047320.1.1 Tomato nucleus 68.92 69.15
Solyc03g005660.2.1 Tomato cytosol 48.87 50.12
Solyc04g007070.2.1 Tomato nucleus 46.96 47.99
Solyc10g008220.2.1 Tomato endoplasmic reticulum 41.22 44.96
Solyc04g007060.2.1 Tomato nucleus 44.14 44.6
Solyc12g010660.1.1 Tomato cytosol 11.94 42.57
Solyc04g007030.2.1 Tomato endoplasmic reticulum 41.89 42.08
Solyc12g006040.1.1 Tomato cytosol 13.63 39.54
Solyc04g015210.2.1 Tomato nucleus 40.54 39.05
Solyc04g007050.2.1 Tomato cytosol 34.91 37.9
VIT_15s0045g00980.t01 Wine grape cytosol 22.3 33.17
Solyc07g009190.1.1 Tomato cytosol 17.91 32.78
KRG88520 Soybean plastid 12.5 31.99
Solyc04g026110.2.1 Tomato cytosol 15.77 31.67
KRH01598 Soybean cytosol 31.19 31.33
Solyc10g051050.1.1 Tomato cytosol 19.48 31.28
VIT_16s0022g01330.t01 Wine grape cytosol 22.18 31.12
Os11t0633500-01 Rice cytosol 18.24 30.68
Solyc01g087200.2.1 Tomato cytosol 30.18 30.45
KRG88521 Soybean cytosol 29.5 30.39
Solyc06g062440.2.1 Tomato nucleus 23.42 30.36
Solyc11g069020.1.1 Tomato cytosol 30.52 30.31
Solyc11g020100.1.1 Tomato cytosol, plasma membrane 21.17 30.08
KRH01595 Soybean cytosol 30.29 30.02
Solyc08g074250.1.1 Tomato cytosol 29.39 29.97
Solyc07g049700.1.1 Tomato cytosol 28.94 29.95
KRH45220 Soybean cytosol, extracellular, plastid 29.84 29.64
Solyc12g009460.1.1 Tomato cytosol 28.83 29.63
VIT_15s0046g02800.t01 Wine grape cytosol 22.86 29.59
Solyc10g008240.2.1 Tomato nucleus 29.62 29.58
KRH17117 Soybean cytosol 29.17 29.53
GSMUA_Achr7P20240_001 Banana mitochondrion 23.2 29.47
KRH01534 Soybean cytosol 27.7 29.43
Solyc07g009180.1.1 Tomato nucleus 29.62 29.16
Solyc12g017800.1.1 Tomato cytosol 28.27 29.15
Solyc08g005500.2.1 Tomato cytosol 23.99 29.14
Solyc11g006630.1.1 Tomato cytosol, plastid 28.15 29.14
Solyc11g006530.1.1 Tomato cytosol, plastid 28.38 29.1
Solyc04g009120.1.1 Tomato cytosol 21.17 29.01
Solyc04g015220.2.1 Tomato cytosol 26.35 29.0
VIT_15s0045g01020.t01 Wine grape cytosol 20.95 28.93
GSMUA_AchrUn_... Banana cytosol 8.9 28.83
Solyc12g009450.1.1 Tomato mitochondrion 31.64 28.79
Solyc05g008070.2.1 Tomato mitochondrion 27.03 28.71
Solyc04g011980.1.1 Tomato cytosol 28.38 28.6
VIT_15s0046g03660.t01 Wine grape cytosol 27.03 28.54
Solyc11g006640.1.1 Tomato cytosol 27.25 28.4
GSMUA_Achr7P20230_001 Banana cytosol 28.27 28.27
Solyc07g005770.2.1 Tomato cytosol 26.13 28.19
Solyc04g011960.1.1 Tomato cytosol 28.15 28.15
Solyc04g009660.2.1 Tomato cytosol 26.46 28.11
TraesCS7A01G562500.1 Wheat cytosol 17.57 28.11
Solyc10g008230.1.1 Tomato cytosol 24.66 27.93
VIT_15s0046g02750.t01 Wine grape cytosol 29.39 27.88
Solyc02g027080.1.1 Tomato cytosol, plasma membrane 29.17 27.88
Solyc12g017810.1.1 Tomato cytosol 6.87 27.85
TraesCS6D01G387400.1 Wheat cytosol 17.91 27.85
TraesCS2D01G510100.1 Wheat cytosol 15.2 27.72
Solyc04g009240.1.1 Tomato cytosol 26.35 27.69
KRH23932 Soybean cytosol 28.94 27.66
TraesCS2D01G510300.1 Wheat cytosol 17.0 27.61
VIT_15s0046g02820.t01 Wine grape cytosol 29.28 27.54
Solyc04g009250.1.1 Tomato cytosol 26.01 27.5
GSMUA_AchrUn_... Banana cytosol 23.2 27.47
Solyc04g009690.1.1 Tomato cytosol 25.79 27.46
Solyc04g012010.2.1 Tomato cytosol 25.56 27.35
Solyc04g009260.1.1 Tomato cytosol 26.13 27.33
TraesCS6B01G447800.1 Wheat cytosol 16.33 27.26
GSMUA_Achr7P20220_001 Banana cytosol 27.59 27.25
Solyc04g009150.1.1 Tomato cytosol 25.9 27.25
VIT_15s0046g02730.t01 Wine grape cytosol 28.15 27.17
Solyc11g006520.1.1 Tomato cytosol, plastid 26.8 27.01
VIT_00s0448g00020.t01 Wine grape cytosol 28.6 26.94
VIT_15s0045g00680.t01 Wine grape cytosol 23.42 26.91
Solyc04g009290.1.1 Tomato cytosol 25.56 26.9
OQU82378 Sorghum nucleus 25.34 26.85
Solyc04g011990.1.1 Tomato cytosol 27.14 26.75
TraesCS2B01G151600.2 Wheat cytosol 25.45 26.68
TraesCS7B01G423500.1 Wheat cytosol 26.01 26.67
Solyc04g009110.1.1 Tomato cytosol 25.23 26.57
VIT_15s0046g02810.t01 Wine grape cytosol 27.93 26.47
VIT_15s0045g00880.t01 Wine grape cytosol 22.41 26.36
VIT_15s0045g00920.t01 Wine grape cytosol 15.43 26.35
TraesCS7B01G500700.1 Wheat cytosol 25.11 26.27
TraesCS1B01G336700.1 Wheat cytosol 23.65 26.18
TraesCS2A01G477200.1 Wheat cytosol 19.93 26.18
TraesCS6A01G403900.1 Wheat plasma membrane, vacuole 22.3 26.16
TraesCS2D01G510000.1 Wheat cytosol 22.64 26.1
Solyc04g009130.2.1 Tomato cytosol 22.75 26.1
TraesCS6A01G404000.1 Wheat cytosol 15.99 25.96
VIT_15s0045g01010.t01 Wine grape cytosol 5.63 25.91
HORVU1Hr1G075170.1 Barley cytosol 25.34 25.86
TraesCS6D01G387500.1 Wheat cytosol, plastid 22.97 25.79
TraesCS1D01G324700.2 Wheat cytosol 25.23 25.75
TraesCS7A01G562000.1 Wheat cytosol 25.23 25.6
TraesCS6B01G448300.2 Wheat cytosol, peroxisome, plasma membrane 22.75 25.54
TraesCS7B01G501000.1 Wheat cytosol 25.11 25.51
TraesCS2B01G536900.1 Wheat cytosol 15.88 25.5
TraesCS7B01G501100.1 Wheat cytosol 25.0 25.49
TraesCS7D01G548100.1 Wheat cytosol 25.45 25.42
VIT_15s0021g00130.t01 Wine grape cytosol, nucleus, plastid 8.9 25.4
HORVU2Hr1G022620.8 Barley cytosol 24.77 25.26
TraesCS1A01G323600.1 Wheat cytosol 24.77 25.26
TraesCS2A01G459100.1 Wheat plastid 22.52 25.16
TraesCS7B01G501900.1 Wheat cytosol 24.66 25.14
TraesCS6B01G448100.1 Wheat cytosol 22.3 25.13
TraesCS7A01G561700.1 Wheat cytosol 24.55 25.12
TraesCS5D01G269100.1 Wheat cytosol 19.37 24.96
TraesCS7B01G500900.1 Wheat cytosol 24.55 24.91
TraesCS6B01G447900.1 Wheat cytosol 20.5 24.83
TraesCS7A01G561900.4 Wheat cytosol 25.56 24.73
TraesCS7B01G501200.1 Wheat cytosol 15.32 24.73
TraesCS6B01G448000.1 Wheat cytosol 7.43 24.35
TraesCS7B01G500800.1 Wheat cytosol 19.71 24.27
Solyc12g096920.1.1 Tomato extracellular 26.01 24.21
VIT_15s0045g00810.t01 Wine grape cytosol 11.6 24.18
TraesCS7B01G449900.2 Wheat cytosol 23.99 24.07
HORVU5Hr1G072540.26 Barley cytosol 23.65 23.89
Os10t0183000-01 Rice plasma membrane 23.99 23.83
TraesCS5A01G261700.1 Wheat cytosol 23.42 23.61
VIT_15s0045g00640.t01 Wine grape cytosol 12.84 23.6
TraesCS6B01G448400.1 Wheat cytosol 22.52 23.58
TraesCS2D01G481300.1 Wheat cytosol 25.34 23.51
TraesCS2B01G507100.1 Wheat cytosol 25.11 23.5
TraesCS7B01G501300.1 Wheat cytosol 7.21 23.19
TraesCS2B01G507000.1 Wheat cytosol 19.03 23.12
TraesCS5A01G261600.1 Wheat cytosol 22.86 23.04
TraesCS2A01G129300.1 Wheat cytosol 6.42 22.8
TraesCS5B01G259900.1 Wheat cytosol 23.65 22.61
Os03t0709200-01 Rice cytosol 23.42 21.69
Zm00001d045512_P001 Maize cytosol, mitochondrion 19.03 20.29
Protein Annotations
Gene3D:3.40.50.300Gene3D:3.80.10.10MapMan:35.1UniProt:A1X877ncoils:CoilEMBL:DQ304484
GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0006950GO:GO:0006952GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987
GO:GO:0016020GO:GO:0043531InterPro:IPR032675InterPro:LRR_dom_sfInterPro:NB-ARCInterPro:P-loop_NTPase
PFAM:PF00931PRINTS:PR00364PANTHER:PTHR43886PANTHER:PTHR43886:SF17InterPro:RX-like_CCSUPFAM:SSF52058
SUPFAM:SSF52540EnsemblPlantsGene:Solyc01g090430.2EnsemblPlants:Solyc01g090430.2.1UniParc:UPI0000ECDC06SEG:seg:
Description
NRC1 [Source:UniProtKB/TrEMBL;Acc:A1X877]
Coordinates
chr1:+:84121020..84125828
Molecular Weight (calculated)
101570.0 Da
IEP (calculated)
8.497
GRAVY (calculated)
-0.326
Length
888 amino acids
Sequence
(BLAST)
001: MVDVGVEFLL ENLKQLVLDN VELIGGAKDE IENLRDDLSE FNAFLKQAAM VRSENPVLKE LVRSIRKVVN RAEDAVDKFV IEAKVHKDKG FKGVFDKPGH
101: YRRVRDAAVE IKGIRDKMRE IRQNKAHGLQ ALLQDHDDSI SRGGEERQPP VVEEDDVVGF DDEAQTVIDR LLEGSGDLEV IPVVGMPGLG KTTLATKIFK
201: HPKIEYEFFT RLWLYVSQSY KTRELYLNII SKFTGNTKHC RDMSEKDLAL KVQEILEEGG KYLIVLDDVW STDAWDRIKI AFPKNDKGNR VLLTTRDHRV
301: ARYCNRSPHD LKFLTDEESW ILLEKRAFHK AKCLPELETN GKSIARKCKG LPLAIVVIAG ALIGKSKTIK EWEQVDQSVG EHFINRDQPN SCDKLVRMSY
401: DVLPYDWKAC FLYFGTFPRG YLIPARKLIR LWIAEGFIQY RGDLSPECKA EEYLNELVNR NLVMVMQRTV DGQIKTCRVH DMLYEFCWQE ATTEENLFHE
501: VKFGGEQSVR EVSTHRRLCI HSSVVEFISK KPSGEHVRSF LCFSPEKIDT PPTVSANISK AFPLLRVFDT ESIKINRFCK EFFQLYHLRY IAFSFDSIKV
601: IPKHVGELWN VQTLIVNTQQ INLDIQADIL NMPRLRHLLT NTSAKLPALA NPKTSKTTLV NQSLQTLSTI APESCTEYVL SRAPNLKKLG IRGKIAKLME
701: PSQSVLLNNV KRLQFLENLK LINVGQIDQT QLRLPPASIF PTKLRKLTLL DTWLEWDDMS VLKQLENLQV LKLKDNAFKG ENWELNDGGF PFLQVLCIER
801: ANLVSWNASG DHFPRLKHLH ISCDKLEKIP IGLADICSLQ VMDLRNSTKS AAKSAREIQA KKNKLQPAKS QKFELSVFPP DSDVQTAS
Best Arabidopsis Sequence Match ( AT1G53350.1 )
(BLAST)
001: MAEAVVSFGV EKLWELLSRE SARLNGIDEQ VDGLKRQLGR LQSLLKDADA KKNETERVRN FLEDVKDIVY DADDIIESFL LNELRGKEKG IKKQVRTLAC
101: FLVDRRKFAS DIEGITKRIS EVIVGMQSLG IQHIADGGGR SLSLQERQRE IRQTFSRNSE SDLVGLDQSV EELVDHLVEN DSVQVVSVSG MGGIGKTTLA
201: RQVFHHDIVR RHFDGFSWVC VSQQFTRKDV WQRILQDLRP YDEGIIQMDE YTLQGELFEL LESGRYLLVL DDVWKEEDWD RIKAVFPHKR GWKMLLTSRN
301: EGLGLHADPT CFAFRPRILT PEQSWKLFER IVSSRRDKTE FKVDEAMGKE MVTYCGGLPL AVKVLGGLLA KKHTVLEWKR VHSNIVTHIV GKSGLSDDNS
401: NSVYRVLSLS YEDLPMQLKH CFFYLAHFPE DYKIDVKILF NYWVAEGIIT PFHDGSTIQD TGESYLEELV RRNMVVVEES YLTSRIEYCQ MHDMMREVCL
501: SKAKEENFIR VVKVPTTTST TINAQSPCRS RRLVLHSGNA LHMLGHKDNK KARSVLIFGV EEKFWKPRGF QCLPLLRVLD LSYVQFEGGK LPSSIGDLIH
601: LRFLSLYEAG VSHLPSSLGN LKLLLCLNLG VADRLLVHVP NVLKEMQELR YLRLPRSMPA KTKLELGDLV NLESLTNFST KHGSVTDLLR MTKLSVLNVI
701: FSGECTFETL LLSLRELRNL ETLSFHDFQK VSVANHGGEL LVLDFIHLKD LTLSMHLPRF PDQYRFPPHL AHIWLIGCRM EEDPMPILEK LLHLKSVYLS
801: SGAFLGRRMV CSKGGFPQLL ALKMSYKKEL VEWRVEEGSM PCLRTLTIDN CKKLKQLPDG LKYVTCLKEL KIERMKREWT ERLVIGGEDY YKVQHIPSVQ
901: FINCDH
Arabidopsis Description
RPP8L2Probable disease resistance RPP8-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P0C8S1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.