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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • cytosol 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:cytosol
Predotar:plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 25464976
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400050826 Potato cytosol 82.1 83.37
Solyc04g007070.2.1 Tomato nucleus 45.88 48.68
Solyc04g007060.2.1 Tomato nucleus 45.99 48.24
Solyc04g007030.2.1 Tomato endoplasmic reticulum 43.49 45.36
Solyc10g047320.1.1 Tomato nucleus 39.15 40.79
Solyc01g090430.2.1 Tomato extracellular 39.05 40.54
Solyc04g007050.2.1 Tomato cytosol 34.06 38.39
Solyc03g005660.2.1 Tomato cytosol 35.03 37.3
Solyc10g008220.2.1 Tomato endoplasmic reticulum 31.02 35.14
Solyc12g006040.1.1 Tomato cytosol 11.17 33.66
Solyc12g010660.1.1 Tomato cytosol 8.79 32.53
Solyc07g009190.1.1 Tomato cytosol 15.73 29.9
VIT_16s0022g01330.t01 Wine grape cytosol 19.74 28.75
VIT_15s0045g00980.t01 Wine grape cytosol 18.22 28.14
Solyc10g051050.1.1 Tomato cytosol 16.81 28.03
Solyc04g026110.2.1 Tomato cytosol 13.34 27.83
Solyc10g008240.2.1 Tomato nucleus 26.57 27.56
KRH45220 Soybean cytosol, extracellular, plastid 26.68 27.52
KRH01595 Soybean cytosol 26.25 27.01
Solyc01g087200.2.1 Tomato cytosol 25.7 26.93
KRG88521 Soybean cytosol 25.16 26.91
Solyc07g049700.1.1 Tomato cytosol 24.95 26.81
Solyc10g008230.1.1 Tomato cytosol 22.67 26.66
KRH01598 Soybean cytosol 25.49 26.58
Solyc08g074250.1.1 Tomato cytosol 25.05 26.52
Solyc11g020100.1.1 Tomato cytosol, plasma membrane 17.9 26.4
Os11t0633500-01 Rice cytosol 15.08 26.33
KRH17117 Soybean cytosol 24.95 26.23
KRG88520 Soybean plastid 9.87 26.22
KRH01534 Soybean cytosol 23.75 26.2
Solyc06g062440.2.1 Tomato nucleus 19.41 26.13
Solyc08g005500.2.1 Tomato cytosol 20.72 26.13
Solyc12g017810.1.1 Tomato cytosol 6.18 26.03
Solyc11g006530.1.1 Tomato cytosol, plastid 24.4 25.98
Solyc11g006640.1.1 Tomato cytosol 23.97 25.94
TraesCS6D01G387400.1 Wheat cytosol 15.94 25.74
Solyc04g009120.1.1 Tomato cytosol 18.0 25.62
Solyc05g008070.2.1 Tomato mitochondrion 23.21 25.6
TraesCS2D01G510300.1 Wheat cytosol 15.18 25.59
TraesCS2A01G477200.1 Wheat cytosol 18.76 25.59
Solyc12g009460.1.1 Tomato cytosol 23.86 25.46
Solyc12g017800.1.1 Tomato cytosol 23.75 25.44
Solyc11g006630.1.1 Tomato cytosol, plastid 23.64 25.41
Solyc04g009660.2.1 Tomato cytosol 22.99 25.36
VIT_15s0046g03660.t01 Wine grape cytosol 23.1 25.33
TraesCS7B01G500700.1 Wheat cytosol 23.32 25.32
Solyc12g009450.1.1 Tomato mitochondrion 26.79 25.31
VIT_15s0046g02800.t01 Wine grape cytosol 18.76 25.22
Solyc04g011980.1.1 Tomato cytosol 24.08 25.2
Solyc11g006520.1.1 Tomato cytosol, plastid 24.08 25.2
VIT_15s0045g01020.t01 Wine grape cytosol 17.57 25.19
TraesCS6B01G447800.1 Wheat cytosol 14.53 25.19
Solyc11g069020.1.1 Tomato cytosol 24.4 25.17
Solyc04g011960.1.1 Tomato cytosol 24.19 25.11
TraesCS2B01G151600.2 Wheat cytosol 22.99 25.03
TraesCS7A01G562500.1 Wheat cytosol 14.97 24.86
VIT_15s0046g02750.t01 Wine grape cytosol 25.16 24.79
Solyc04g015220.2.1 Tomato cytosol 21.69 24.78
Solyc04g009290.1.1 Tomato cytosol 22.67 24.76
KRH23932 Soybean cytosol 24.95 24.76
GSMUA_Achr7P20240_001 Banana mitochondrion 18.76 24.75
OQU82378 Sorghum nucleus 22.45 24.7
Solyc04g011990.1.1 Tomato cytosol 24.08 24.64
TraesCS6D01G387500.1 Wheat cytosol, plastid 21.04 24.53
Solyc04g009150.1.1 Tomato cytosol 22.34 24.41
Solyc04g009250.1.1 Tomato cytosol 22.23 24.4
Solyc04g009260.1.1 Tomato cytosol 22.45 24.38
TraesCS2D01G510100.1 Wheat cytosol 12.8 24.23
TraesCS7A01G562000.1 Wheat cytosol 22.99 24.23
TraesCS6A01G403900.1 Wheat plasma membrane, vacuole 19.85 24.17
TraesCS7B01G501900.1 Wheat cytosol 22.78 24.11
Solyc04g009690.1.1 Tomato cytosol 21.8 24.1
TraesCS2D01G510000.1 Wheat cytosol 20.07 24.03
Solyc04g009240.1.1 Tomato cytosol 22.02 24.02
Solyc04g009110.1.1 Tomato cytosol 21.91 23.96
Solyc07g005770.2.1 Tomato cytosol 21.37 23.94
TraesCS7B01G501100.1 Wheat cytosol 22.56 23.88
Solyc07g009180.1.1 Tomato nucleus 23.32 23.84
TraesCS7B01G501000.1 Wheat cytosol 22.56 23.8
VIT_00s0448g00020.t01 Wine grape cytosol 24.3 23.75
Solyc04g012010.2.1 Tomato cytosol 21.37 23.73
TraesCS7A01G561700.1 Wheat cytosol 22.34 23.73
VIT_15s0046g02730.t01 Wine grape cytosol 23.64 23.7
TraesCS7B01G423500.1 Wheat cytosol 22.23 23.67
Solyc04g009130.2.1 Tomato cytosol 19.85 23.64
TraesCS6B01G448300.2 Wheat cytosol, peroxisome, plasma membrane 20.28 23.64
TraesCS7B01G501200.1 Wheat cytosol 14.1 23.64
TraesCS1B01G336700.1 Wheat cytosol 20.5 23.57
TraesCS7B01G500900.1 Wheat cytosol 22.34 23.54
VIT_15s0046g02820.t01 Wine grape cytosol 24.08 23.52
TraesCS7D01G548100.1 Wheat cytosol 22.67 23.51
TraesCS2B01G536900.1 Wheat cytosol 14.1 23.51
VIT_15s0046g02810.t01 Wine grape cytosol 23.86 23.48
TraesCS6B01G448100.1 Wheat cytosol 20.07 23.48
GSMUA_Achr7P20220_001 Banana cytosol 22.89 23.47
TraesCS6B01G447900.1 Wheat cytosol 18.66 23.47
VIT_15s0045g00680.t01 Wine grape cytosol 19.63 23.42
TraesCS6A01G404000.1 Wheat cytosol 13.88 23.4
Solyc02g027080.1.1 Tomato cytosol, plasma membrane 23.54 23.36
GSMUA_Achr7P20230_001 Banana cytosol 22.45 23.31
TraesCS7B01G500800.1 Wheat cytosol 18.22 23.3
HORVU2Hr1G022620.8 Barley cytosol 21.8 23.08
GSMUA_AchrUn_... Banana cytosol 6.83 22.99
TraesCS7A01G561900.4 Wheat cytosol 22.89 22.98
TraesCS1D01G324700.2 Wheat cytosol 21.58 22.87
TraesCS1A01G323600.1 Wheat cytosol 21.58 22.85
GSMUA_AchrUn_... Banana cytosol 18.55 22.8
VIT_15s0045g00810.t01 Wine grape cytosol 10.52 22.77
TraesCS6B01G448400.1 Wheat cytosol 20.93 22.76
VIT_15s0045g00880.t01 Wine grape cytosol 18.55 22.65
HORVU1Hr1G075170.1 Barley cytosol 21.26 22.53
TraesCS6B01G448000.1 Wheat cytosol 6.62 22.51
TraesCS7B01G449900.2 Wheat cytosol 21.58 22.49
VIT_15s0045g00920.t01 Wine grape cytosol 12.58 22.31
Solyc12g096920.1.1 Tomato extracellular 22.78 22.01
TraesCS2A01G459100.1 Wheat plastid 18.87 21.89
TraesCS5D01G269100.1 Wheat cytosol 16.27 21.77
VIT_15s0045g01010.t01 Wine grape cytosol 4.56 21.76
VIT_15s0021g00130.t01 Wine grape cytosol, nucleus, plastid 7.27 21.54
VIT_15s0045g00640.t01 Wine grape cytosol 11.28 21.53
TraesCS2B01G507100.1 Wheat cytosol 21.8 21.18
Os10t0183000-01 Rice plasma membrane 20.5 21.14
TraesCS2B01G507000.1 Wheat cytosol 16.7 21.07
TraesCS7B01G501300.1 Wheat cytosol 6.29 21.01
TraesCS2D01G481300.1 Wheat cytosol 21.8 21.0
TraesCS5A01G261600.1 Wheat cytosol 19.96 20.89
TraesCS5A01G261700.1 Wheat cytosol 19.96 20.89
HORVU5Hr1G072540.26 Barley cytosol 19.63 20.59
Os03t0709200-01 Rice cytosol 21.15 20.33
Zm00001d045512_P001 Maize cytosol, mitochondrion 18.33 20.29
TraesCS5B01G259900.1 Wheat cytosol 20.17 20.02
TraesCS2A01G129300.1 Wheat cytosol 5.42 20.0
Protein Annotations
Gene3D:3.40.50.300Gene3D:3.80.10.10MapMan:35.1ncoils:CoilGO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006464GO:GO:0006950GO:GO:0006952GO:GO:0007154GO:GO:0007165GO:GO:0007265
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0019538GO:GO:0019888GO:GO:0019903
GO:GO:0030234GO:GO:0043531GO:GO:0043666GO:GO:0050790InterPro:IPR032675UniProt:K4BQ24
InterPro:LRR_dom_sfInterPro:NB-ARCInterPro:P-loop_NTPasePFAM:PF00931PRINTS:PR00364PANTHER:PTHR43886
PANTHER:PTHR43886:SF17InterPro:RX-like_CCSUPFAM:SSF52058SUPFAM:SSF52540EnsemblPlantsGene:Solyc04g015210.2EnsemblPlants:Solyc04g015210.2.1
UniParc:UPI00027669CESEG:seg::::
Description
No Description!
Coordinates
chr4:-:5390900..5396168
Molecular Weight (calculated)
105405.0 Da
IEP (calculated)
8.459
GRAVY (calculated)
-0.242
Length
922 amino acids
Sequence
(BLAST)
001: MEAIIVAAVS PAATKAVSFL VDSLSQLLSE NVELIRGADR DFQRLLDEIE PINELLAGDY AQLKSNNNDL DKLFQNIQRT VYKAEDAIDK FLIQAKIDEA
101: NFFNKIGPFV KWNNNRKIAP EFGKILEQVT EIRKQTQQVL EKTGIQSSAF QPGETTQPQG PAEEDVEVVG FNKPAEDVKE RLCEGSKDLD VIPIVGMPGL
201: GKTTLSRKVY NDSSLDFYFY HKIWIYVGTS KKPKDILVEI VKEVAQSNSK ELIKDKDEDQ LAHIIRDFLV ERGKHLIVLD DVWDTQVVDF VKKAFPNKKS
301: RPRGDRIMLT TRQQRVAEAV SARPHYLENL SKEDSIKLLE QRVFANKRTC PIELQGYRDG IVDKCCGVPL AIVVISGALR GCMDESEWRV VEENVGKHLI
401: NKDDHKSCLK FVETSYNHLP QEKKAAFLYF GVFPQGFDIP AWNLIRLWVA EGLIKSGHKD SEIEKVAETY LSDFASRNLV MVMQKRSNGQ IKTCRLHDML
501: HEFCIIEAAR ISLFQQVYLQ PGVRVFPSIE DPNTSRRLCI QSSIPYNFIP KDRIVQHVRS LLCFSSDQKQ IDLSNLDVQL IPSAFPLIRV LDIQSLIFEF
601: SKMFYGLFHL RYIAIKGDFT IIPSLFRNFW YLQTLILRND DTNTSSSTLE IKEDIWKLLQ LRHLHSDLPV KLPPPPTTTS NSRTSCLQTL SKVTPDSCKK
701: TVFAKACHLR KLGIEGKLAL LLGKERGFDS FQELRCIEKL KLLNNDFSEE LHLPPHFFSL QKTLNKLTLS STRFKWSEAD MLGQLECLKV LKLKENAFTG
801: KKWKPKKGSF SKLQVLHIVW AGEWETWDAS NRPFQSLTHL ALISCYDLKA VPHELADLPY LQEMKLTRTF QAVSSAIEIK NKILQRIELC HGVPSRIIFL
901: QSIPTKQTCC LSSIVILQNK FN
Best Arabidopsis Sequence Match ( AT1G58848.1 )
(BLAST)
0001: MAGELISFGI QNLWNLLSQE CELFQGVEDQ VTELKRDLNL LSSFLKDADA KKHTSAVVKN CVEEIKEIIY DGEDTIETFV LEQNLGKTSG IKKSIRRLAC
0101: IIPDRRRYAL GIGGLSNRIS KVIRDMQSFG VQQAIVDGGY KQPQGDKQRE MRPRFSKDDD SDFVGLEANV KKLVGYLVDE ANVQVVSITG MGGLGKTTLA
0201: KQVFNHEDVK HQFDGLSWVC VSQDFTRMNV WQKILRDLKP KEEEKKIMEM TQDTLQGELI RLLETSKSLI VLDDIWEKED WELIKPIFPP TKGWKVLLTS
0301: RNESVAMRRN TSYINFKPEC LTTEDSWTLF QRIALPMKDA AEFKIDEEKE ELGKLMIKHC GGLPLAIRVL GGMLAEKYTS HDWRRLSENI GSHLVGGRTN
0401: FNDDNNNTCN YVLSLSFEEL PSYLKHCFLY LAHFPDDYEI NVKNLSYYWA AEGIFQPRHY DGEIIRDVGD VYIEELVRRN MVISERDVKT SRFETCHLHD
0501: MMREVCLLKA KEENFLQITS SRTSTGNSLS IVTSRRLVYQ YPITLDVEKD INDPKLRSLV VVANTYMFWG GWSWMLLGSS FIRLELLRVL DIHRAKLKGG
0601: KLASSIGQLI HLRYLNLKHA EVTHIPYSLG NLKLLIYLNL VILVSGSTLV PNVLKEMQQL RYLALPKDMG RKTKLELSNL VKLETLKNFS TKNCSLEDLR
0701: GMVRLRTLTI ELRKETSLET LAASIGGLKY LESLTITDLG SEMRTKEAGI VFDFVYLKTL TLKLYMPRLS KEQHFPSHLT TLYLQHCRLE EDPMPILEKL
0801: HQLKELELRR KSFSGKEMVC SSGGFPQLQK LSIKGLEEWE DWKVEESSMP VLHTLDIRDC RKLKQLPDEH LPSHLTSISL FFCCLEEDPM PTLERLVHLK
0901: ELQLLFRSFS GRIMVCAGSG FPQLHKLKLS ELDGLEEWIV EDGSMPQLHT LEIRRCPKLK KLPNGFPQLQ NLELNELEEW EEWIVEDGSM PLLHTLRIWN
1001: CPKLKQLPDG LRFIYSLKNL TVPKRWKKRL SKGGEDYYKV QHIPSVEFY
Arabidopsis Description
RF9Probable disease resistance protein RDL6 [Source:UniProtKB/Swiss-Prot;Acc:P0DI18]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.