Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400014271 | Potato | nucleus | 86.51 | 84.82 |
| Solyc07g041830.2.1 | Tomato | nucleus | 60.32 | 57.58 |
| VIT_11s0016g01130.t01 | Wine grape | nucleus | 44.05 | 40.36 |
| KRH19323 | Soybean | nucleus | 35.71 | 38.46 |
| KRH02606 | Soybean | plastid | 36.11 | 33.21 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 33.33 | 33.2 |
| Solyc08g061490.2.1 | Tomato | nucleus | 26.19 | 33.0 |
| EES13970 | Sorghum | nucleus | 29.37 | 32.89 |
| Os08t0458200-01 | Rice | nucleus | 29.37 | 31.9 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 27.38 | 31.36 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 26.98 | 30.63 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 26.59 | 30.45 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 28.57 | 30.13 |
| Zm00001d032058_P002 | Maize | nucleus | 28.97 | 29.8 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 29.76 | 23.81 |
Protein Annotations
| EnsemblPlants:Solyc05g025900.2.1 | EnsemblPlantsGene:Solyc05g025900.2 | ncoils:Coil | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF14 | SEG:seg |
| UniParc:UPI0002765CE9 | UniProt:K4BZX7 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5:-:37515695..37518190
Molecular Weight (calculated)
27065.4 Da
IEP (calculated)
10.288
GRAVY (calculated)
-0.691
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIVLGRNNS SDHRIKPSGF TAHEMTSMPI YNSPEFGIGD PRDDRSSSFS SSSSSSSIGR NSDDSPAGRS SSDGDGEEVQ SSFKPGGLDN LGTLEEVLPI
101: KRSISKFYAG KSKSFTSLAD AASISSVKEI VKPEDAYTRK RKNLLAHNNF FGKNRSYLPG MGNRGIYKRP INSRSSSALA ASVSCSDSSE SLNSSPSSPC
201: LTRPPLPPQT RRYRNESSLS PPDRKLNAWR SFSLSDLQGA AAAAPSLMGI RK
101: KRSISKFYAG KSKSFTSLAD AASISSVKEI VKPEDAYTRK RKNLLAHNNF FGKNRSYLPG MGNRGIYKRP INSRSSSALA ASVSCSDSSE SLNSSPSSPC
201: LTRPPLPPQT RRYRNESSLS PPDRKLNAWR SFSLSDLQGA AAAAPSLMGI RK
001: MFTAIDKIDR TFTVDQEFAC LSSSTSSDSI GENSDDDEGG ENEIESSYNG PLDMMESLEE ALPIKRAISK FYKGKSKSFM SLSETSSLPV KDLTKPENLY
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFGNCVPVV DSPRCFQTAA GRNIHNIIC
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFGNCVPVV DSPRCFQTAA GRNIHNIIC
Arabidopsis Description
Uncharacterized protein T28A8_140 [Source:UniProtKB/TrEMBL;Acc:Q9LZG3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.