Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G43850.1 | OQU92006 | AT2G01950.1 | 19000166 |
| AT5G21940.1 | EES09373 | AT4G09570.1 | 19130088 |
| AT5G21940.1 | EES16732 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032058_P002 | Maize | nucleus | 87.11 | 80.0 |
| Os08t0458200-01 | Rice | nucleus | 72.89 | 70.69 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 52.44 | 53.64 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 51.56 | 52.73 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 45.78 | 46.4 |
| CDY72322 | Canola | nucleus | 24.0 | 41.54 |
| CDY70329 | Canola | nucleus | 23.56 | 40.77 |
| CDY00605 | Canola | nucleus | 23.56 | 40.77 |
| Bra023734.1-P | Field mustard | nucleus | 23.11 | 40.0 |
| Bra027841.1-P | Field mustard | nucleus | 22.22 | 38.46 |
| CDY45139 | Canola | nucleus | 22.22 | 38.46 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 52.89 | 37.78 |
| KRH15596 | Soybean | nucleus | 37.33 | 36.21 |
| CDY30897 | Canola | nucleus, plastid | 15.11 | 36.17 |
| KRH05420 | Soybean | nucleus | 38.22 | 35.98 |
| KRH52259 | Soybean | nucleus | 26.22 | 32.07 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 35.56 | 31.62 |
| CDY09110 | Canola | nucleus | 33.78 | 30.52 |
| Bra020159.1-P | Field mustard | nucleus | 33.78 | 30.52 |
| Solyc07g041830.2.1 | Tomato | nucleus | 35.11 | 29.92 |
| CDX92393 | Canola | nucleus | 32.89 | 29.72 |
| Bra002375.1-P | Field mustard | nucleus | 32.89 | 29.72 |
| CDX70969 | Canola | nucleus | 31.11 | 29.54 |
| CDY16606 | Canola | nucleus | 32.0 | 29.51 |
| Solyc05g025900.2.1 | Tomato | nucleus | 32.89 | 29.37 |
| PGSC0003DMT400014271 | Potato | nucleus | 33.33 | 29.18 |
| CDX88821 | Canola | nucleus | 31.11 | 29.05 |
| Bra006598.1-P | Field mustard | nucleus | 30.67 | 28.75 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 33.33 | 28.41 |
| PGSC0003DMT400033852 | Potato | nucleus | 32.89 | 28.03 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 34.67 | 27.76 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 29.33 | 27.62 |
| VIT_11s0016g01130.t01 | Wine grape | nucleus | 32.89 | 26.91 |
| PGSC0003DMT400062692 | Potato | nucleus | 23.56 | 26.5 |
| Solyc08g061490.2.1 | Tomato | nucleus | 22.67 | 25.5 |
| KRH19323 | Soybean | nucleus | 26.22 | 25.21 |
| KRH61588 | Soybean | extracellular, nucleus | 21.33 | 23.08 |
| AT3G43850.1 | Thale cress | nucleus | 27.11 | 22.59 |
| KRH02606 | Soybean | plastid | 26.22 | 21.53 |
Protein Annotations
| EnsemblPlants:EES13970 | EnsemblPlantsGene:SORBI_3007G150200 | EntrezGene:8083507 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF14 | ProteinID:EES13970 |
| ProteinID:EES13970.1 | RefSeq:XP_002444475.1 | SEG:seg | unigene:Sbi.10670 | UniParc:UPI0001A87A58 | UniProt:C5YM44 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:58204700..58208304
Molecular Weight (calculated)
23555.4 Da
IEP (calculated)
6.667
GRAVY (calculated)
-0.448
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVDVEAAMG TPQPASACSS SSIGGDSDEC SPPGKEEEGE GEVQSAYAGG GEGGGGLAGL EALEEALPIR RSISKFYNGK SKSFACLKEA ITFSGSAKDI
101: TKAENAYSRK RKNLLAYSIM YGNSYETSAA QVYETAPPKR LASLSRNSLV TLASSSSRSS SSISIQEHEL PEHLHSPCSP DGFISAPPSG SCVPNASSVP
201: MRSLSMMDLH RVHRSSSSVG LKDRK
101: TKAENAYSRK RKNLLAYSIM YGNSYETSAA QVYETAPPKR LASLSRNSLV TLASSSSRSS SSISIQEHEL PEHLHSPCSP DGFISAPPSG SCVPNASSVP
201: MRSLSMMDLH RVHRSSSSVG LKDRK
001: MFTAIDKIDR TFTVDQEFAC LSSSTSSDSI GENSDDDEGG ENEIESSYNG PLDMMESLEE ALPIKRAISK FYKGKSKSFM SLSETSSLPV KDLTKPENLY
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFEAFTFQD KSETDEDHKK ATKGATKPVN QTWSSSGHSI
201: KTRQWPRSTI AEARRAGESM ASIDKLMAEN FLDNVNLDPI SIKKSRDPCV PKSSCCLFLN TSLYFLGRTD
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFEAFTFQD KSETDEDHKK ATKGATKPVN QTWSSSGHSI
201: KTRQWPRSTI AEARRAGESM ASIDKLMAEN FLDNVNLDPI SIKKSRDPCV PKSSCCLFLN TSLYFLGRTD
Arabidopsis Description
Uncharacterized protein T28A8_140 [Source:UniProtKB/TrEMBL;Acc:Q9LZG3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.