Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G21940.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT5G21940.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88821 | Canola | nucleus | 84.39 | 82.99 |
| CDY09110 | Canola | nucleus | 70.46 | 67.07 |
| CDY16606 | Canola | nucleus | 67.93 | 65.98 |
| CDX92393 | Canola | nucleus | 68.35 | 65.06 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 68.78 | 61.74 |
| CDY70329 | Canola | nucleus | 29.11 | 53.08 |
| CDY45139 | Canola | nucleus | 28.69 | 52.31 |
| CDY00605 | Canola | nucleus | 28.69 | 52.31 |
| CDY72322 | Canola | nucleus | 27.85 | 50.77 |
| CDY30897 | Canola | nucleus, plastid | 18.99 | 47.87 |
| KRH52259 | Soybean | nucleus | 32.49 | 41.85 |
| KRH15596 | Soybean | nucleus | 40.51 | 41.38 |
| KRH05420 | Soybean | nucleus | 41.35 | 41.0 |
| KRH61588 | Soybean | extracellular, nucleus | 29.96 | 34.13 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 39.66 | 33.45 |
| Solyc08g061490.2.1 | Tomato | nucleus | 27.0 | 32.0 |
| EES13970 | Sorghum | nucleus | 29.54 | 31.11 |
| PGSC0003DMT400062692 | Potato | nucleus | 26.16 | 31.0 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 28.27 | 30.45 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 28.27 | 30.45 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 27.43 | 29.28 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 31.22 | 29.25 |
| Os08t0458200-01 | Rice | nucleus | 27.43 | 28.02 |
| Zm00001d032058_P002 | Maize | nucleus | 28.69 | 27.76 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 27.85 | 27.62 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 28.27 | 21.27 |
Protein Annotations
| EnsemblPlants:CDX70969 | EnsemblPlantsGene:GSBRNA2T00140890001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF6 | ProteinID:CDX70969 | ProteinID:CDX70969.1 |
| SEG:seg | UniParc:UPI0004EEA8C8 | MapMan:35.2 | : | : | : |
Description
BnaC03g10530D
Coordinates
chrLK031791:-:2967051..2968914
Molecular Weight (calculated)
25102.2 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.529
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRIESYVLN VSGDHLYQSS SESFSSPSSS IGKNSDDDDG EDGVGENEAE SPYKCPLDLM ESLEEALPVR KGISNYYNGK SKSFTNLAAG AASALACSSS
101: MKDLAKPENP YSRRRRNLLC HQISDNKTTP RGKILKKHIM SSSRSALALA MAVAAGVIAE EGSSSGGDSS TGTSPTITGS PPRKMMLPPL HPRSQMSFGN
201: LESSQSSTGF CAWRSYSVAD IPRCVPTTAN GIGSTES
101: MKDLAKPENP YSRRRRNLLC HQISDNKTTP RGKILKKHIM SSSRSALALA MAVAAGVIAE EGSSSGGDSS TGTSPTITGS PPRKMMLPPL HPRSQMSFGN
201: LESSQSSTGF CAWRSYSVAD IPRCVPTTAN GIGSTES
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.