Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G21940.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT5G21940.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020159.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY16606 | Canola | nucleus | 71.08 | 72.54 |
| CDX92393 | Canola | nucleus | 71.08 | 71.08 |
| CDX70969 | Canola | nucleus | 67.07 | 70.46 |
| CDX88821 | Canola | nucleus | 66.27 | 68.46 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 71.08 | 67.05 |
| CDY70329 | Canola | nucleus | 30.12 | 57.69 |
| CDY45139 | Canola | nucleus | 29.32 | 56.15 |
| CDY72322 | Canola | nucleus | 28.92 | 55.38 |
| CDY00605 | Canola | nucleus | 28.92 | 55.38 |
| CDY30897 | Canola | nucleus, plastid | 20.08 | 53.19 |
| KRH52259 | Soybean | nucleus | 33.33 | 45.11 |
| KRH15596 | Soybean | nucleus | 38.55 | 41.38 |
| KRH05420 | Soybean | nucleus | 38.96 | 40.59 |
| KRH61588 | Soybean | extracellular, nucleus | 31.33 | 37.5 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 38.96 | 34.52 |
| EES13970 | Sorghum | nucleus | 30.52 | 33.78 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 27.71 | 31.36 |
| Os08t0458200-01 | Rice | nucleus | 28.92 | 31.03 |
| Solyc08g061490.2.1 | Tomato | nucleus | 24.9 | 31.0 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 27.31 | 30.91 |
| Zm00001d032058_P002 | Maize | nucleus | 30.12 | 30.61 |
| PGSC0003DMT400062692 | Potato | nucleus | 24.5 | 30.5 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 30.92 | 30.43 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 25.7 | 28.83 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 27.31 | 28.45 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 28.51 | 22.54 |
Protein Annotations
| EnsemblPlants:CDY09110 | EnsemblPlantsGene:GSBRNA2T00001330001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF6 | ProteinID:CDY09110 | ProteinID:CDY09110.1 |
| SEG:seg | UniParc:UPI0002543426 | UniProt:A0A078F3P1 | MapMan:35.2 | : | : |
Description
BnaA02g05360DBnaA02g05360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3P1]
Coordinates
chrLK031993:-:147614..148705
Molecular Weight (calculated)
26496.5 Da
IEP (calculated)
6.677
GRAVY (calculated)
-0.612
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRVESYVFD ISGDSLYQSS SSESFSSPSS SSAASSSIGK NSDDEEDFHG GEGEENEAES TYKGPLALME SLEEVLPVRK GISSFYNGKS KSFTNLAAEA
101: ASALTSSSSM KDLVAKPENP YSRRRRNLLC HQIWENNNKK TTPRGGISKK HVMSSSRSAL TLAMAVAAGE GSSSGGDSSQ GSSPSPPRQR HHQTMMMMLP
201: PLYPRSQGSV GNLKSSQSSL EFCALRSYSV ADISRCFPST ASGLGASDS
101: ASALTSSSSM KDLVAKPENP YSRRRRNLLC HQIWENNNKK TTPRGGISKK HVMSSSRSAL TLAMAVAAGE GSSSGGDSSQ GSSPSPPRQR HHQTMMMMLP
201: PLYPRSQGSV GNLKSSQSSL EFCALRSYSV ADISRCFPST ASGLGASDS
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.