Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 | |
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G43850.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
| AT5G21940.1 | HORVU4Hr1G019530.1 | AT4G09570.1 | 19130088 |
| AT5G21940.1 | HORVU5Hr1G032550.3 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G207800.1 | Wheat | nucleus | 58.41 | 83.64 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 58.1 | 83.18 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 50.16 | 71.17 |
| EES13970 | Sorghum | nucleus | 37.78 | 52.89 |
| Os08t0458200-01 | Rice | nucleus | 37.78 | 51.29 |
| Zm00001d032058_P002 | Maize | nucleus | 36.19 | 46.53 |
| CDY30897 | Canola | nucleus, plastid | 13.33 | 44.68 |
| Bra027841.1-P | Field mustard | nucleus | 17.14 | 41.54 |
| CDY45139 | Canola | nucleus | 17.14 | 41.54 |
| Bra023734.1-P | Field mustard | nucleus | 16.83 | 40.77 |
| CDY72322 | Canola | nucleus | 16.83 | 40.77 |
| CDY70329 | Canola | nucleus | 16.83 | 40.77 |
| CDY00605 | Canola | nucleus | 16.51 | 40.0 |
| KRH15596 | Soybean | nucleus | 25.08 | 34.05 |
| KRH52259 | Soybean | nucleus | 19.68 | 33.7 |
| KRH05420 | Soybean | nucleus | 25.4 | 33.47 |
| Solyc07g041830.2.1 | Tomato | nucleus | 25.71 | 30.68 |
| Solyc05g025900.2.1 | Tomato | nucleus | 23.81 | 29.76 |
| PGSC0003DMT400014271 | Potato | nucleus | 23.81 | 29.18 |
| CDY09110 | Canola | nucleus | 22.54 | 28.51 |
| Bra020159.1-P | Field mustard | nucleus | 22.54 | 28.51 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 25.4 | 28.47 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 22.86 | 28.46 |
| PGSC0003DMT400033852 | Potato | nucleus | 23.81 | 28.41 |
| CDX70969 | Canola | nucleus | 21.27 | 28.27 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 23.49 | 28.03 |
| KRH61588 | Soybean | extracellular, nucleus | 18.41 | 27.88 |
| CDX92393 | Canola | nucleus | 21.9 | 27.71 |
| Bra002375.1-P | Field mustard | nucleus | 21.9 | 27.71 |
| VIT_11s0016g01130.t01 | Wine grape | nucleus | 23.81 | 27.27 |
| Bra006598.1-P | Field mustard | nucleus | 20.63 | 27.08 |
| CDY16606 | Canola | nucleus | 20.95 | 27.05 |
| CDX88821 | Canola | nucleus | 20.63 | 26.97 |
| KRH19323 | Soybean | nucleus | 20.0 | 26.92 |
| PGSC0003DMT400062692 | Potato | nucleus | 16.83 | 26.5 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 20.0 | 26.36 |
| Solyc08g061490.2.1 | Tomato | nucleus | 16.51 | 26.0 |
| KRH02606 | Soybean | plastid | 19.68 | 22.63 |
| AT3G43850.1 | Thale cress | nucleus | 18.41 | 21.48 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G061730.2 | EnsemblPlantsGene:HORVU5Hr1G061730 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF14 | SEG:seg | UniParc:UPI000B47C43F |
| UniProt:A0A287RGD0 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:481394265..481397300
Molecular Weight (calculated)
33826.1 Da
IEP (calculated)
9.508
GRAVY (calculated)
-0.349
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: SIINYELICT LRGAVILLIR NGSPLFIYYI TRCVQFKTSA PSIRAFSYLK SHLLLKPTTT ATTRGGVSSF LPVPVADQSS HRRGRDHRIG GAGSRSGGRM
101: PPRPEPCCSS SSSSLGNDSD EGGAPAGKEE GDGEVQSAYS GAGLGGLASL EESLPIRRGI SKFYNGKSRS FTFLKEAIGP SGSAKVIAKA DNAYSRKRKN
201: LLAYNIMYGQ AQITVPETYE NGISKRLASL SRLRPLDAMS SNSSSSSSLS SDENESPQQF IFMQSPDDPA IIAPQLGSCA PKMLPVPTRS FSMVNLQRLH
301: SRCSSVCLKE EQEAD
101: PPRPEPCCSS SSSSLGNDSD EGGAPAGKEE GDGEVQSAYS GAGLGGLASL EESLPIRRGI SKFYNGKSRS FTFLKEAIGP SGSAKVIAKA DNAYSRKRKN
201: LLAYNIMYGQ AQITVPETYE NGISKRLASL SRLRPLDAMS SNSSSSSSLS SDENESPQQF IFMQSPDDPA IIAPQLGSCA PKMLPVPTRS FSMVNLQRLH
301: SRCSSVCLKE EQEAD
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.