Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88821 | Canola | nucleus | 97.5 | 97.1 |
| Bra002375.1-P | Field mustard | nucleus | 69.58 | 67.07 |
| Bra020159.1-P | Field mustard | nucleus | 69.58 | 67.07 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 69.58 | 63.26 |
| Bra023734.1-P | Field mustard | nucleus | 28.33 | 52.31 |
| Bra027841.1-P | Field mustard | nucleus | 27.92 | 51.54 |
| KRH52259 | Soybean | nucleus | 33.75 | 44.02 |
| KRH15596 | Soybean | nucleus | 40.0 | 41.38 |
| KRH05420 | Soybean | nucleus | 39.17 | 39.33 |
| KRH61588 | Soybean | extracellular, nucleus | 30.42 | 35.1 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 37.92 | 32.38 |
| EES13970 | Sorghum | nucleus | 28.75 | 30.67 |
| Solyc08g061490.2.1 | Tomato | nucleus | 25.0 | 30.0 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 31.25 | 29.64 |
| PGSC0003DMT400062692 | Potato | nucleus | 24.58 | 29.5 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 26.67 | 28.83 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 25.83 | 28.18 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 25.83 | 28.18 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 27.92 | 28.03 |
| Zm00001d032058_P002 | Maize | nucleus | 28.33 | 27.76 |
| Os08t0458200-01 | Rice | nucleus | 26.25 | 27.16 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 27.08 | 20.63 |
Protein Annotations
Description
AT5G21940 (E=8e-057) | unknown protein
Coordinates
chrA03:-:4205311..4206215
Molecular Weight (calculated)
25520.6 Da
IEP (calculated)
7.937
GRAVY (calculated)
-0.606
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTEMDRIES YVLNVSGDHL YDRSSSESFS SPSSSIGRNS DDDDDGEYGV GENEAESPYK CPLDLMESLE EALPVRKGIS KYYNGKSKSF TNLAAGAASA
101: LASSSSMKDV AKPENPYGRR RRNLLCHQIW ENNKTTPRGR ISKKQMMSSS RSALALAMAV AAGVMAGEGS SSGGDSSTGT SPTISGSLPR KMMLPPLHPR
201: SQGSSGNLKS SGFCAWRSYS VADIPRCFPT TANGIGSTDS
101: LASSSSMKDV AKPENPYGRR RRNLLCHQIW ENNKTTPRGR ISKKQMMSSS RSALALAMAV AAGVMAGEGS SSGGDSSTGT SPTISGSLPR KMMLPPLHPR
201: SQGSSGNLKS SGFCAWRSYS VADIPRCFPT TANGIGSTDS
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.