Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G216000.1 | Wheat | nucleus | 91.36 | 91.36 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 77.27 | 76.58 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 83.64 | 58.41 |
| EES13970 | Sorghum | nucleus | 53.64 | 52.44 |
| Os08t0458200-01 | Rice | nucleus | 52.27 | 49.57 |
| Zm00001d032058_P002 | Maize | nucleus | 51.36 | 46.12 |
| CDY30897 | Canola | nucleus, plastid | 18.18 | 42.55 |
| Bra027841.1-P | Field mustard | nucleus | 25.0 | 42.31 |
| CDY45139 | Canola | nucleus | 25.0 | 42.31 |
| CDY72322 | Canola | nucleus | 24.55 | 41.54 |
| CDY70329 | Canola | nucleus | 24.55 | 41.54 |
| Bra023734.1-P | Field mustard | nucleus | 24.55 | 41.54 |
| CDY00605 | Canola | nucleus | 24.09 | 40.77 |
| KRH15596 | Soybean | nucleus | 34.55 | 32.76 |
| KRH52259 | Soybean | nucleus | 27.27 | 32.61 |
| KRH05420 | Soybean | nucleus | 35.0 | 32.22 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 34.55 | 30.04 |
| Solyc07g041830.2.1 | Tomato | nucleus | 34.09 | 28.41 |
| CDX70969 | Canola | nucleus | 30.45 | 28.27 |
| Bra002375.1-P | Field mustard | nucleus | 31.36 | 27.71 |
| CDX92393 | Canola | nucleus | 31.36 | 27.71 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 30.0 | 27.62 |
| CDY16606 | Canola | nucleus | 30.45 | 27.46 |
| CDY09110 | Canola | nucleus | 30.91 | 27.31 |
| Bra020159.1-P | Field mustard | nucleus | 30.91 | 27.31 |
| PGSC0003DMT400062692 | Potato | nucleus | 24.55 | 27.0 |
| PGSC0003DMT400033852 | Potato | nucleus | 32.27 | 26.89 |
| Solyc05g025900.2.1 | Tomato | nucleus | 30.45 | 26.59 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 31.82 | 26.52 |
| Solyc08g061490.2.1 | Tomato | nucleus | 24.09 | 26.5 |
| KRH19323 | Soybean | nucleus | 28.18 | 26.5 |
| KRH61588 | Soybean | extracellular, nucleus | 25.0 | 26.44 |
| PGSC0003DMT400014271 | Potato | nucleus | 30.45 | 26.07 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 33.18 | 25.98 |
| Bra006598.1-P | Field mustard | nucleus | 28.18 | 25.83 |
| CDX88821 | Canola | nucleus | 28.18 | 25.73 |
| VIT_11s0016g01130.t01 | Wine grape | nucleus | 31.82 | 25.45 |
| AT3G43850.1 | Thale cress | nucleus | 27.27 | 22.22 |
| KRH02606 | Soybean | plastid | 26.36 | 21.17 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G207800.1 | EnsemblPlantsGene:TraesCS5B01G207800 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF14 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr5B:-:377344574..377346786
Molecular Weight (calculated)
23624.5 Da
IEP (calculated)
5.095
GRAVY (calculated)
-0.544
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPQPEPCSS SSSLGNDSDE GGAPTGKEDG EGEVQSAYSG AGLDGLAALE ESLPIRRGIS KFYNGKSRSF TFLKEAIGPS GSAKVIAKAD NAYSRKRKNL
101: LAYSIMYNQS QITVPETYEN GFSKRFAGLS RLRPSDGMSS NSSSSSSLSS DENEPPQQFI FVQSPDNTAQ FASPAITTPR LGSCMSKILP VPMRSFSMVN
201: LQRLHSRCSS VCLEEEPEVD
101: LAYSIMYNQS QITVPETYEN GFSKRFAGLS RLRPSDGMSS NSSSSSSLSS DENEPPQQFI FVQSPDNTAQ FASPAITTPR LGSCMSKILP VPMRSFSMVN
201: LQRLHSRCSS VCLEEEPEVD
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.