Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 | |
| Zm00001d004812_P002 | |
| Zm00001d023560_P002 | |
| Zm00001d053016_P002 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13970 | Sorghum | nucleus | 80.0 | 87.11 |
| Os08t0458200-01 | Rice | nucleus | 64.9 | 68.53 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 46.12 | 51.36 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 45.31 | 50.45 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 39.59 | 43.69 |
| CDY72322 | Canola | nucleus | 20.82 | 39.23 |
| CDY70329 | Canola | nucleus | 20.82 | 39.23 |
| CDY00605 | Canola | nucleus | 20.82 | 39.23 |
| Bra023734.1-P | Field mustard | nucleus | 20.41 | 38.46 |
| CDY45139 | Canola | nucleus | 20.0 | 37.69 |
| Bra027841.1-P | Field mustard | nucleus | 20.0 | 37.69 |
| KRH15596 | Soybean | nucleus | 34.69 | 36.64 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 46.53 | 36.19 |
| KRH05420 | Soybean | nucleus | 35.1 | 35.98 |
| CDY30897 | Canola | nucleus, plastid | 13.47 | 35.11 |
| KRH52259 | Soybean | nucleus | 24.08 | 32.07 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 32.24 | 31.23 |
| CDY09110 | Canola | nucleus | 30.61 | 30.12 |
| Bra020159.1-P | Field mustard | nucleus | 30.61 | 30.12 |
| Bra002375.1-P | Field mustard | nucleus | 30.2 | 29.72 |
| CDX92393 | Canola | nucleus | 30.2 | 29.72 |
| CDY16606 | Canola | nucleus | 29.39 | 29.51 |
| Solyc07g041830.2.1 | Tomato | nucleus | 31.43 | 29.17 |
| Solyc05g025900.2.1 | Tomato | nucleus | 29.8 | 28.97 |
| CDX70969 | Canola | nucleus | 27.76 | 28.69 |
| CDX88821 | Canola | nucleus | 28.16 | 28.63 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 30.61 | 28.41 |
| PGSC0003DMT400014271 | Potato | nucleus | 29.8 | 28.4 |
| Bra006598.1-P | Field mustard | nucleus | 27.76 | 28.33 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 26.94 | 27.62 |
| PGSC0003DMT400033852 | Potato | nucleus | 29.39 | 27.27 |
| PGSC0003DMT400062692 | Potato | nucleus | 21.63 | 26.5 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 30.2 | 26.33 |
| VIT_11s0016g01130.t01 | Wine grape | nucleus | 29.39 | 26.18 |
| Solyc08g061490.2.1 | Tomato | nucleus | 20.82 | 25.5 |
| KRH19323 | Soybean | nucleus | 24.08 | 25.21 |
| KRH61588 | Soybean | extracellular, nucleus | 20.0 | 23.56 |
| AT3G43850.1 | Thale cress | nucleus | 24.9 | 22.59 |
| KRH02606 | Soybean | plastid | 24.08 | 21.53 |
Protein Annotations
| EnsemblPlants:Zm00001d032058_P002 | EnsemblPlants:Zm00001d032058_T002 | EnsemblPlantsGene:Zm00001d032058 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF14 | ProteinID:ONM04313.1 |
| SEG:seg | UniParc:UPI000842E755 | UniProt:A0A1D6KNB7 | MapMan:35.2 | : | : |
Description
MTD1
Coordinates
chr1:-:211054138..211060475
Molecular Weight (calculated)
26134.6 Da
IEP (calculated)
6.675
GRAVY (calculated)
-0.428
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVDVEAAMA PPQAASACSS SSIGRDSDEC SPPGKEEEGE GEVQSAYEGG GGGSLAGLEA LEEALPIRDY SVGVILPLLS TNGTLLRFAL NERSISKFYN
101: GKSKSFVCLK EAITFSGSAK DITKSENAYS RKRKNLFAYI IMYGNSHEPR AAQVYETAAP KRHASLSRNS LVTLASSSSR SSSSISIEEH ELPEHLDSPR
201: SPDGFISAPR SGSCVPDASV PRSLSMMDLH RLNRSSSSVR LKDGK
101: GKSKSFVCLK EAITFSGSAK DITKSENAYS RKRKNLFAYI IMYGNSHEPR AAQVYETAAP KRHASLSRNS LVTLASSSSR SSSSISIEEH ELPEHLDSPR
201: SPDGFISAPR SGSCVPDASV PRSLSMMDLH RLNRSSSSVR LKDGK
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.