Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G43850.1 | KRH42483 | AT2G01950.1 | 19000166 |
| AT3G43850.1 | KRH58580 | AT2G01950.1 | 19000166 |
| AT5G21940.1 | KRG91803 | AT4G09570.1 | 19130088 |
| AT5G21940.1 | KRH34983 | AT4G09570.1 | 19130088 |
| AT5G21940.1 | KRH34984 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH15596 | Soybean | nucleus | 75.73 | 78.02 |
| KRH52259 | Soybean | nucleus | 43.1 | 55.98 |
| CDY72322 | Canola | nucleus | 27.2 | 50.0 |
| CDY70329 | Canola | nucleus | 27.2 | 50.0 |
| Bra023734.1-P | Field mustard | nucleus | 27.2 | 50.0 |
| Bra027841.1-P | Field mustard | nucleus | 27.2 | 50.0 |
| CDY45139 | Canola | nucleus | 27.2 | 50.0 |
| CDY00605 | Canola | nucleus | 26.36 | 48.46 |
| CDY30897 | Canola | nucleus, plastid | 18.83 | 47.87 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 53.56 | 45.55 |
| KRH61588 | Soybean | extracellular, nucleus | 39.33 | 45.19 |
| CDX70969 | Canola | nucleus | 41.0 | 41.35 |
| CDX92393 | Canola | nucleus | 41.0 | 39.36 |
| Bra002375.1-P | Field mustard | nucleus | 41.0 | 39.36 |
| Bra006598.1-P | Field mustard | nucleus | 39.33 | 39.17 |
| CDY09110 | Canola | nucleus | 40.59 | 38.96 |
| Bra020159.1-P | Field mustard | nucleus | 40.59 | 38.96 |
| CDY16606 | Canola | nucleus | 39.75 | 38.93 |
| CDX88821 | Canola | nucleus | 38.91 | 38.59 |
| EES13970 | Sorghum | nucleus | 35.98 | 38.22 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 41.84 | 37.88 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 33.05 | 35.91 |
| PGSC0003DMT400062692 | Potato | nucleus | 29.71 | 35.5 |
| Solyc08g061490.2.1 | Tomato | nucleus | 29.71 | 35.5 |
| Zm00001d032058_P002 | Maize | nucleus | 35.98 | 35.1 |
| KRH19323 | Soybean | nucleus | 34.31 | 35.04 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 32.22 | 35.0 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 36.82 | 34.78 |
| Os08t0458200-01 | Rice | nucleus | 33.47 | 34.48 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 29.71 | 31.98 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 31.38 | 31.38 |
| KRH02606 | Soybean | plastid | 33.05 | 28.83 |
| AT3G43850.1 | Thale cress | nucleus | 29.29 | 25.93 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 33.47 | 25.4 |
Protein Annotations
| EMBL:ACUP02010743 | EnsemblPlants:KRH05420 | EnsemblPlantsGene:GLYMA_17G226500 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF6 | ProteinID:KRH05419.1 |
| ProteinID:KRH05420 | ProteinID:KRH05420.1 | SEG:seg | UniParc:UPI00023DB0B7 | UniProt:I1MX85 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr17:-:38091013..38093234
Molecular Weight (calculated)
25675.7 Da
IEP (calculated)
8.120
GRAVY (calculated)
-0.585
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSRAAVLLH AQEEEEEECS TSTSSSIGRN SDVSSERSME EGENEVESAY HGPLHAMETL EEVLPIRRGI SNFYNGKSKS FTTLADAVSS PSVKDIAKPE
101: NAYTRRRRNL MALNHVLDKN NRNYPLRSSG GGICKRSISL SRSSLALAVA MNNSDSSSSI TSEDSGSSSN SLHSPSPLPP LHPRNRVSSS SGSGPSSPLL
201: RNFSPWRSFS VADLQQHCAI AATIKISSPS VGNKTAHPS
101: NAYTRRRRNL MALNHVLDKN NRNYPLRSSG GGICKRSISL SRSSLALAVA MNNSDSSSSI TSEDSGSSSN SLHSPSPLPP LHPRNRVSSS SGSGPSSPLL
201: RNFSPWRSFS VADLQQHCAI AATIKISSPS VGNKTAHPS
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.