Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 | |
| PGSC0003DMT400075691 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G43850.1 | PGSC0003DMT400075691 | AT2G01950.1 | 19000166 |
| AT5G21940.1 | PGSC0003DMT400002331 | AT4G09570.1 | 19130088 |
| AT5G21940.1 | PGSC0003DMT400067082 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g061490.2.1 | Tomato | nucleus | 93.5 | 93.5 |
| CDY30897 | Canola | nucleus, plastid | 17.5 | 37.23 |
| CDY72322 | Canola | nucleus | 24.0 | 36.92 |
| Bra023734.1-P | Field mustard | nucleus | 23.5 | 36.15 |
| Bra027841.1-P | Field mustard | nucleus | 23.5 | 36.15 |
| CDY00605 | Canola | nucleus | 23.5 | 36.15 |
| CDY70329 | Canola | nucleus | 23.5 | 36.15 |
| CDY45139 | Canola | nucleus | 23.5 | 36.15 |
| KRH15596 | Soybean | nucleus | 36.0 | 31.03 |
| KRH05420 | Soybean | nucleus | 35.5 | 29.71 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 40.0 | 28.47 |
| KRH52259 | Soybean | nucleus | 25.0 | 27.17 |
| PGSC0003DMT400014271 | Potato | nucleus | 34.0 | 26.46 |
| CDX70969 | Canola | nucleus | 31.0 | 26.16 |
| PGSC0003DMT400033852 | Potato | nucleus | 34.0 | 25.76 |
| KRH61588 | Soybean | extracellular, nucleus | 26.0 | 25.0 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 32.5 | 24.62 |
| Bra006598.1-P | Field mustard | nucleus | 29.5 | 24.58 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 27.0 | 24.55 |
| CDY09110 | Canola | nucleus | 30.5 | 24.5 |
| Bra020159.1-P | Field mustard | nucleus | 30.5 | 24.5 |
| CDY16606 | Canola | nucleus | 29.5 | 24.18 |
| Os08t0458200-01 | Rice | nucleus | 28.0 | 24.14 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 26.5 | 24.09 |
| CDX88821 | Canola | nucleus | 29.0 | 24.07 |
| CDX92393 | Canola | nucleus | 29.5 | 23.69 |
| Bra002375.1-P | Field mustard | nucleus | 29.5 | 23.69 |
| EES13970 | Sorghum | nucleus | 26.5 | 23.56 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 26.0 | 23.42 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 29.0 | 22.92 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 27.0 | 22.59 |
| Zm00001d032058_P002 | Maize | nucleus | 26.5 | 21.63 |
| AT3G43850.1 | Thale cress | nucleus | 27.0 | 20.0 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 26.5 | 16.83 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400062692 | EnsemblPlantsGene:PGSC0003DMG400024395 | EntrezGene:102595245 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF6 | PGSC:PGSC0003DMG400024395 |
| RefSeq:XP_006353848.1 | UniParc:UPI000295DCD1 | UniProt:M1C9E8 | MapMan:35.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024395]
Coordinates
chr8:+:32973872..32975921
Molecular Weight (calculated)
22041.0 Da
IEP (calculated)
8.133
GRAVY (calculated)
-0.598
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISMIMDKR EVEGSCGFMD ALSCDTQEAL FGGNKQVFIN EEKACTCSSS SSIGENSDTI SHEESMDDDS QEVESPFTSI QPLHQVLPIR KGMSRFYNGK
101: SKSFTSLREA STSSSAKELA KPENASYINK KRRNILACRL PNKKNHTGIS KKKHIGILAM NSGLCDNSTS WRSFSLADLQ FVSVTTTPTT LQHAEKKPTN
101: SKSFTSLREA STSSSAKELA KPENASYINK KRRNILACRL PNKKNHTGIS KKKHIGILAM NSGLCDNSTS WRSFSLADLQ FVSVTTTPTT LQHAEKKPTN
001: MFTAIDKIDR TFTVDQEFAC LSSSTSSDSI GENSDDDEGG ENEIESSYNG PLDMMESLEE ALPIKRAISK FYKGKSKSFM SLSETSSLPV KDLTKPENLY
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFEAFTFQD KSETDEDHKK ATKGATKPVN QTWSSSGHSI
201: KTRQWPRSTI AEARRAGESM ASIDKLMAEN FLDNVNLDPI SIKKSRDPCV PKSSCCLFLN TSLYFLGRTD
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFEAFTFQD KSETDEDHKK ATKGATKPVN QTWSSSGHSI
201: KTRQWPRSTI AEARRAGESM ASIDKLMAEN FLDNVNLDPI SIKKSRDPCV PKSSCCLFLN TSLYFLGRTD
Arabidopsis Description
Uncharacterized protein T28A8_140 [Source:UniProtKB/TrEMBL;Acc:Q9LZG3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.