Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027841.1-P | Field mustard | nucleus | 31.85 | 66.15 |
| CDY45139 | Canola | nucleus | 31.85 | 66.15 |
| CDY30897 | Canola | nucleus, plastid | 22.96 | 65.96 |
| Bra023734.1-P | Field mustard | nucleus | 29.63 | 61.54 |
| CDY00605 | Canola | nucleus | 29.63 | 61.54 |
| CDY70329 | Canola | nucleus | 29.63 | 61.54 |
| CDY72322 | Canola | nucleus | 29.63 | 61.54 |
| KRH52259 | Soybean | nucleus | 21.85 | 32.07 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 29.26 | 29.92 |
| KRH15596 | Soybean | nucleus | 25.56 | 29.74 |
| KRH05420 | Soybean | nucleus | 25.93 | 29.29 |
| Solyc08g061490.2.1 | Tomato | nucleus | 20.74 | 28.0 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 22.22 | 27.27 |
| EES13970 | Sorghum | nucleus | 22.59 | 27.11 |
| PGSC0003DMT400062692 | Potato | nucleus | 20.0 | 27.0 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 21.85 | 26.82 |
| Os08t0458200-01 | Rice | nucleus | 22.59 | 26.29 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 21.11 | 25.68 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 26.67 | 25.62 |
| Zm00001d032058_P002 | Maize | nucleus | 22.59 | 24.9 |
| KRH61588 | Soybean | extracellular, nucleus | 18.89 | 24.52 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 21.11 | 22.53 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 19.63 | 22.18 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 21.48 | 18.41 |
Protein Annotations
| MapMan:35.2 | EntrezGene:823498 | ProteinID:AEE77835.1 | ArrayExpress:AT3G43850 | EnsemblPlantsGene:AT3G43850 | RefSeq:AT3G43850 |
| TAIR:AT3G43850 | RefSeq:AT3G43850-TAIR-G | EnsemblPlants:AT3G43850.1 | TAIR:AT3G43850.1 | Unigene:At.53706 | ProteinID:CAB83157.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0008150 |
| RefSeq:NP_189971.1 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF14 | UniProt:Q9LZG3 | UniParc:UPI00000A7465 | SEG:seg |
Description
Uncharacterized protein T28A8_140 [Source:UniProtKB/TrEMBL;Acc:Q9LZG3]
Coordinates
chr3:-:15702085..15704152
Molecular Weight (calculated)
30146.3 Da
IEP (calculated)
8.474
GRAVY (calculated)
-0.754
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MFTAIDKIDR TFTVDQEFAC LSSSTSSDSI GENSDDDEGG ENEIESSYNG PLDMMESLEE ALPIKRAISK FYKGKSKSFM SLSETSSLPV KDLTKPENLY
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFEAFTFQD KSETDEDHKK ATKGATKPVN QTWSSSGHSI
201: KTRQWPRSTI AEARRAGESM ASIDKLMAEN FLDNVNLDPI SIKKSRDPCV PKSSCCLFLN TSLYFLGRTD
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFEAFTFQD KSETDEDHKK ATKGATKPVN QTWSSSGHSI
201: KTRQWPRSTI AEARRAGESM ASIDKLMAEN FLDNVNLDPI SIKKSRDPCV PKSSCCLFLN TSLYFLGRTD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.