Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020159.1-P | Field mustard | nucleus | 67.05 | 71.08 |
| CDY09110 | Canola | nucleus | 67.05 | 71.08 |
| Bra002375.1-P | Field mustard | nucleus | 65.91 | 69.88 |
| CDX92393 | Canola | nucleus | 65.91 | 69.88 |
| Bra006598.1-P | Field mustard | nucleus | 63.26 | 69.58 |
| CDX88821 | Canola | nucleus | 63.26 | 69.29 |
| CDY16606 | Canola | nucleus | 64.02 | 69.26 |
| CDX70969 | Canola | nucleus | 61.74 | 68.78 |
| KRH52259 | Soybean | nucleus | 31.06 | 44.57 |
| KRH05420 | Soybean | nucleus | 37.88 | 41.84 |
| KRH15596 | Soybean | nucleus | 36.36 | 41.38 |
| KRH61588 | Soybean | extracellular, nucleus | 30.68 | 38.94 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 35.98 | 33.81 |
| Solyc08g061490.2.1 | Tomato | nucleus | 25.38 | 33.5 |
| EES13970 | Sorghum | nucleus | 28.41 | 33.33 |
| PGSC0003DMT400062692 | Potato | nucleus | 24.62 | 32.5 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 26.89 | 31.98 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 26.52 | 31.82 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 26.52 | 31.82 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 30.3 | 31.62 |
| Zm00001d032058_P002 | Maize | nucleus | 28.41 | 30.61 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 27.65 | 30.54 |
| Os08t0458200-01 | Rice | nucleus | 26.52 | 30.17 |
| AT3G43850.1 | Thale cress | nucleus | 29.92 | 29.26 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 28.03 | 23.49 |
Protein Annotations
| MapMan:35.2 | EntrezGene:832254 | UniProt:A0A178UKY2 | ProteinID:AAO73902.1 | ProteinID:AED92959.1 | ArrayExpress:AT5G21940 |
| EnsemblPlantsGene:AT5G21940 | RefSeq:AT5G21940 | TAIR:AT5G21940 | RefSeq:AT5G21940-TAIR-G | EnsemblPlants:AT5G21940.1 | TAIR:AT5G21940.1 |
| EMBL:AY136480 | EMBL:BT006300 | ProteinID:CAC34487.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016310 |
| GO:GO:0016740 | RefSeq:NP_680182.1 | ProteinID:OAO94458.1 | PO:PO:0000293 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF6 |
| UniProt:Q9C593 | UniParc:UPI00000561F2 | SEG:seg | : | : | : |
Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
Coordinates
chr5:-:7249014..7250770
Molecular Weight (calculated)
28007.1 Da
IEP (calculated)
6.874
GRAVY (calculated)
-0.710
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.