CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43850.1	KRH42483	AT2G01950.1	19000166
AT3G43850.1	KRH58580	AT2G01950.1	19000166
AT5G21940.1	KRG91803	AT4G09570.1	19130088
AT5G21940.1	KRH34983	AT4G09570.1	19130088
AT5G21940.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61588	Soybean	extracellular, nucleus	67.39	59.62
CDY30897	Canola	nucleus, plastid	24.46	47.87
CDY72322	Canola	nucleus	33.15	46.92
CDY70329	Canola	nucleus	33.15	46.92
Bra023734.1-P	Field mustard	nucleus	33.15	46.92
Bra027841.1-P	Field mustard	nucleus	33.15	46.92
CDY45139	Canola	nucleus	33.15	46.92
KRH15596	Soybean	nucleus	57.61	45.69
CDY00605	Canola	nucleus	32.07	45.38
KRH05420	Soybean	nucleus	55.98	43.1
CDX92393	Canola	nucleus	47.28	34.94
Bra002375.1-P	Field mustard	nucleus	47.28	34.94
CDY16606	Canola	nucleus	46.2	34.84
Bra006598.1-P	Field mustard	nucleus	44.02	33.75
CDY09110	Canola	nucleus	45.11	33.33
Bra020159.1-P	Field mustard	nucleus	45.11	33.33
CDX88821	Canola	nucleus	43.48	33.2
CDX70969	Canola	nucleus	41.85	32.49
VIT_04s0008g02000.t01	Wine grape	nucleus	48.37	31.67
AT5G21940.1	Thale cress	nucleus, plastid	44.57	31.06
GSMUA_Achr9P27430_001	Banana	nucleus	39.67	28.85
KRH19323	Soybean	nucleus	36.41	28.63
GSMUA_Achr3P07970_001	Banana	nucleus	36.96	28.45
TraesCS5B01G207800.1	Wheat	nucleus	32.61	27.27
TraesCS5A01G209700.1	Wheat	nucleus	32.61	27.03
TraesCS5D01G216000.1	Wheat	nucleus	32.07	26.82
EES13970	Sorghum	nucleus	32.07	26.22
Solyc08g061490.2.1	Tomato	nucleus	27.72	25.5
Os08t0458200-01	Rice	nucleus	32.07	25.43
PGSC0003DMT400062692	Potato	nucleus	27.17	25.0
KRH02606	Soybean	plastid	36.96	24.82
Zm00001d032058_P002	Maize	nucleus	32.07	24.08
AT3G43850.1	Thale cress	nucleus	32.07	21.85
HORVU5Hr1G061730.2	Barley	endoplasmic reticulum, extracellular	33.7	19.68

Protein Annotations

EMBL:ACUP02003415	EnsemblPlants:KRH52259	EnsemblPlantsGene:GLYMA_06G056600	PANTHER:PTHR33172	PANTHER:PTHR33172:SF6	ProteinID:KRH52258.1
ProteinID:KRH52259	ProteinID:KRH52259.1	SEG:seg	UniParc:UPI00023C26B7	UniProt:K7KTA6	MapMan:35.2

Description

hypothetical protein

Coordinates

chr6:-:4286782..4289058

Molecular Weight (calculated)

20179.0 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.834

Length

184 amino acids

Sequence
(BLAST)

001: MGGFGVWMEA SPSFEVEDDN EHCSTSATSS IGNDSDVLSE TECGENDNEA HSTYKCHQPL DTMDSLQQVL PIRRGISKFY DGKSKSFTSL ADAGSTPSVK
101: DIAKPENAYT RRRRNLMWEK SRNYPLRSNN GGISKRTTIS SSRSTVTLAF AINYDSNSSC ASEDSFSSSN PRSPPPLPPL HPQN

Best Arabidopsis Sequence Match ( AT5G21940.1 )
(BLAST)

001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS

Arabidopsis Description

At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.