Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G43850.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT3G43850.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70329 | Canola | nucleus | 93.85 | 93.85 |
| CDY00605 | Canola | nucleus | 93.08 | 93.08 |
| CDY45139 | Canola | nucleus | 88.46 | 88.46 |
| CDY30897 | Canola | nucleus, plastid | 63.85 | 88.3 |
| KRH52259 | Soybean | nucleus | 46.92 | 33.15 |
| AT3G43850.1 | Thale cress | nucleus | 61.54 | 29.63 |
| CDY09110 | Canola | nucleus | 55.38 | 28.92 |
| CDY16606 | Canola | nucleus | 52.31 | 27.87 |
| CDX70969 | Canola | nucleus | 50.77 | 27.85 |
| CDX92393 | Canola | nucleus | 53.08 | 27.71 |
| KRH05420 | Soybean | nucleus | 50.0 | 27.2 |
| CDX88821 | Canola | nucleus | 50.0 | 26.97 |
| KRH15596 | Soybean | nucleus | 47.69 | 26.72 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 42.31 | 25.0 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 41.54 | 24.55 |
| Solyc08g061490.2.1 | Tomato | nucleus | 37.69 | 24.5 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 41.54 | 24.32 |
| EES13970 | Sorghum | nucleus | 41.54 | 24.0 |
| PGSC0003DMT400062692 | Potato | nucleus | 36.92 | 24.0 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 51.54 | 23.84 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 40.77 | 22.18 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 43.08 | 22.13 |
| Os08t0458200-01 | Rice | nucleus | 37.69 | 21.12 |
| Zm00001d032058_P002 | Maize | nucleus | 39.23 | 20.82 |
| KRH61588 | Soybean | extracellular, nucleus | 33.08 | 20.67 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 40.77 | 16.83 |
Protein Annotations
| EnsemblPlants:CDY72322 | EnsemblPlantsGene:GSBRNA2T00027682001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF14 | ProteinID:CDY72322 | ProteinID:CDY72322.1 |
| SEG:seg | UniParc:UPI0004EF022B | UniProt:A0A078K357 | MapMan:35.2 | : | : |
Description
BnaCnng77090DBnaCnng77090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K357]
Coordinates
chrLK050185:-:842..1324
Molecular Weight (calculated)
14533.9 Da
IEP (calculated)
9.743
GRAVY (calculated)
-0.958
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKFGWSFSS SSPIGKNSDD EGRENEAESP YKGPLDTMES LEEVLPIRRG ISKFYNGKSK SFASLNNTES LSIKDLGRPD NLYSRHRRNL LRHRLYSQGG
101: ISKKPLKGNF TVVSSCGDDS SSASHLKHQH
101: ISKKPLKGNF TVVSSCGDDS SSASHLKHQH
001: MFTAIDKIDR TFTVDQEFAC LSSSTSSDSI GENSDDDEGG ENEIESSYNG PLDMMESLEE ALPIKRAISK FYKGKSKSFM SLSETSSLPV KDLTKPENLY
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFEAFTFQD KSETDEDHKK ATKGATKPVN QTWSSSGHSI
201: KTRQWPRSTI AEARRAGESM ASIDKLMAEN FLDNVNLDPI SIKKSRDPCV PKSSCCLFLN TSLYFLGRTD
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFEAFTFQD KSETDEDHKK ATKGATKPVN QTWSSSGHSI
201: KTRQWPRSTI AEARRAGESM ASIDKLMAEN FLDNVNLDPI SIKKSRDPCV PKSSCCLFLN TSLYFLGRTD
Arabidopsis Description
Uncharacterized protein T28A8_140 [Source:UniProtKB/TrEMBL;Acc:Q9LZG3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.