Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os10t0114400-01 | |
| Os11t0171500-01 | |
| Os12t0169800-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G43850.1 | Os10t0114400-01 | AT2G01950.1 | 19000166 |
| AT5G21940.1 | Os11t0171500-01 | AT4G09570.1 | 19130088 |
| AT5G21940.1 | Os12t0169800-00 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13970 | Sorghum | nucleus | 70.69 | 72.89 |
| Zm00001d032058_P002 | Maize | nucleus | 68.53 | 64.9 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 50.86 | 53.64 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 49.57 | 52.27 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 43.53 | 45.5 |
| CDY00605 | Canola | nucleus | 21.55 | 38.46 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 51.29 | 37.78 |
| Bra023734.1-P | Field mustard | nucleus | 21.12 | 37.69 |
| CDY70329 | Canola | nucleus | 21.12 | 37.69 |
| CDY72322 | Canola | nucleus | 21.12 | 37.69 |
| Bra027841.1-P | Field mustard | nucleus | 19.83 | 35.38 |
| CDY45139 | Canola | nucleus | 19.83 | 35.38 |
| CDY30897 | Canola | nucleus, plastid | 14.22 | 35.11 |
| KRH15596 | Soybean | nucleus | 34.05 | 34.05 |
| KRH05420 | Soybean | nucleus | 34.48 | 33.47 |
| KRH52259 | Soybean | nucleus | 25.43 | 32.07 |
| Solyc07g041830.2.1 | Tomato | nucleus | 35.34 | 31.06 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 32.76 | 30.04 |
| PGSC0003DMT400014271 | Potato | nucleus | 32.76 | 29.57 |
| PGSC0003DMT400033852 | Potato | nucleus | 33.62 | 29.55 |
| Solyc05g025900.2.1 | Tomato | nucleus | 31.9 | 29.37 |
| Bra020159.1-P | Field mustard | nucleus | 31.03 | 28.92 |
| CDY09110 | Canola | nucleus | 31.03 | 28.92 |
| PGSC0003DMT400062692 | Potato | nucleus | 24.14 | 28.0 |
| Bra002375.1-P | Field mustard | nucleus | 29.74 | 27.71 |
| CDX92393 | Canola | nucleus | 29.74 | 27.71 |
| CDY16606 | Canola | nucleus | 28.88 | 27.46 |
| CDX70969 | Canola | nucleus | 28.02 | 27.43 |
| Solyc08g061490.2.1 | Tomato | nucleus | 23.28 | 27.0 |
| CDX88821 | Canola | nucleus | 27.59 | 26.56 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 30.17 | 26.52 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 27.16 | 26.36 |
| Bra006598.1-P | Field mustard | nucleus | 27.16 | 26.25 |
| VIT_11s0016g01130.t01 | Wine grape | nucleus | 31.03 | 26.18 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 31.47 | 25.98 |
| KRH19323 | Soybean | nucleus | 24.57 | 24.36 |
| KRH61588 | Soybean | extracellular, nucleus | 21.55 | 24.04 |
| AT3G43850.1 | Thale cress | nucleus | 26.29 | 22.59 |
| KRH02606 | Soybean | plastid | 25.86 | 21.9 |
Protein Annotations
| EnsemblPlants:Os08t0458200-01 | EnsemblPlantsGene:Os08g0458200 | EntrezGene:4345757 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF14 | ProteinID:BAD09586.1 |
| ProteinID:BAF23884.1 | ProteinID:BAT05743.1 | RefSeq:XP_015648716.1 | SEG:seg | UniParc:UPI000023AE89 | UniProt:Q6ZC09 |
| MapMan:35.2 | : | : | : | : | : |
Description
Similar to MTD1. (Os08t0458200-01)
Coordinates
chr8:+:22462399..22464860
Molecular Weight (calculated)
24724.9 Da
IEP (calculated)
5.913
GRAVY (calculated)
-0.516
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVDVGRAAA REAAMPAACS SSSIGKDSDE CSPPGKEEEE GEEVQSAFVG GGGGLAGLEA LEEALPIRRS ISKFYNGKSK SFACLKEAVS SCGSAKDIAK
101: AESAYSRKRK NLLAYSIMYE TSQETAAEVY ETGPPKRLAS LSRNSLVTLA SSSSRSSSSI SIEETELTEQ LHSPPSLAND ENSAVYNAPA LQLGSCDPKT
201: SSVPVRSFSM MDLRRLHRPR SSCRLKDQKT TE
101: AESAYSRKRK NLLAYSIMYE TSQETAAEVY ETGPPKRLAS LSRNSLVTLA SSSSRSSSSI SIEETELTEQ LHSPPSLAND ENSAVYNAPA LQLGSCDPKT
201: SSVPVRSFSM MDLRRLHRPR SSCRLKDQKT TE
001: MFTAIDKIDR TFTVDQEFAC LSSSTSSDSI GENSDDDEGG ENEIESSYNG PLDMMESLEE ALPIKRAISK FYKGKSKSFM SLSETSSLPV KDLTKPENLY
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFEAFTFQD KSETDEDHKK ATKGATKPVN QTWSSSGHSI
201: KTRQWPRSTI AEARRAGESM ASIDKLMAEN FLDNVNLDPI SIKKSRDPCV PKSSCCLFLN TSLYFLGRTD
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFEAFTFQD KSETDEDHKK ATKGATKPVN QTWSSSGHSI
201: KTRQWPRSTI AEARRAGESM ASIDKLMAEN FLDNVNLDPI SIKKSRDPCV PKSSCCLFLN TSLYFLGRTD
Arabidopsis Description
Uncharacterized protein T28A8_140 [Source:UniProtKB/TrEMBL;Acc:Q9LZG3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.