Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g025900.2.1 | Tomato | nucleus | 84.82 | 86.51 |
| PGSC0003DMT400033852 | Potato | nucleus | 63.03 | 61.36 |
| VIT_11s0016g01130.t01 | Wine grape | nucleus | 43.97 | 41.09 |
| KRH19323 | Soybean | nucleus | 36.58 | 40.17 |
| KRH02606 | Soybean | plastid | 36.58 | 34.31 |
| PGSC0003DMT400062692 | Potato | nucleus | 26.46 | 34.0 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 33.46 | 33.99 |
| EES13970 | Sorghum | nucleus | 29.18 | 33.33 |
| Os08t0458200-01 | Rice | nucleus | 29.57 | 32.76 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 26.07 | 30.45 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 26.07 | 30.45 |
| Zm00001d032058_P002 | Maize | nucleus | 28.4 | 29.8 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 25.68 | 29.73 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 27.24 | 29.29 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 29.18 | 23.81 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400014271 | EnsemblPlantsGene:PGSC0003DMG400005597 | EntrezGene:102597989 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF14 | PGSC:PGSC0003DMG400005597 |
| RefSeq:XP_006338117.1 | SEG:seg | UniParc:UPI000296162C | UniProt:M1A3Y1 | MapMan:35.2 | : |
Description
MTD1 [Source:PGSC_GENE;Acc:PGSC0003DMG400005597]
Coordinates
chr5:+:28304417..28307171
Molecular Weight (calculated)
27588.7 Da
IEP (calculated)
9.312
GRAVY (calculated)
-0.724
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIVLGRNNS SDHRIEPSGF ATHGMTSIPI YNSPEFGIGD PRDQEDDRSS SFSSSSSSSS IGRNSDDSPA GRSSSDGDGE EVQSSFKPGG LDNLETLEEV
101: LPIKRSISKF YAGKSKSFTS LADAASISSV KEIVKPEDAY TRKRKNLLAH NNFFGKNRSY LPGMGNGGIY KRPINSRSSS ALAASVSCSD SNYSSKSLNS
201: SPSSPCLSRP PLPPQTRRYR NESSLSPPEQ KLNAWRSFSL SDLQGAAATP SLMGIKE
101: LPIKRSISKF YAGKSKSFTS LADAASISSV KEIVKPEDAY TRKRKNLLAH NNFFGKNRSY LPGMGNGGIY KRPINSRSSS ALAASVSCSD SNYSSKSLNS
201: SPSSPCLSRP PLPPQTRRYR NESSLSPPEQ KLNAWRSFSL SDLQGAAATP SLMGIKE
001: MFTAIDKIDR TFTVDQEFAC LSSSTSSDSI GENSDDDEGG ENEIESSYNG PLDMMESLEE ALPIKRAISK FYKGKSKSFM SLSETSSLPV KDLTKPENLY
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFEAFTFQD KSETDEDHKK ATKGATKPVN QTWSSSGHSI
201: KTRQWPRSTI AEARRAGESM ASIDKLMAEN FLDNVNLDPI SIKKSRDPCV PKSSCCLFLN TSLYFLGRTD
101: SRRRRNLLSH RICSRGGISK KPFKSVLAMS QREGDSSSSG DDSLPTLRQH HKTLTPRLRK GSFEAFTFQD KSETDEDHKK ATKGATKPVN QTWSSSGHSI
201: KTRQWPRSTI AEARRAGESM ASIDKLMAEN FLDNVNLDPI SIKKSRDPCV PKSSCCLFLN TSLYFLGRTD
Arabidopsis Description
Uncharacterized protein T28A8_140 [Source:UniProtKB/TrEMBL;Acc:Q9LZG3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.