Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P07970_001 | Banana | nucleus | 42.29 | 44.77 |
| CDY30897 | Canola | nucleus, plastid | 16.6 | 44.68 |
| CDY72322 | Canola | nucleus | 22.13 | 43.08 |
| Bra023734.1-P | Field mustard | nucleus | 21.74 | 42.31 |
| Bra027841.1-P | Field mustard | nucleus | 21.74 | 42.31 |
| CDY00605 | Canola | nucleus | 21.74 | 42.31 |
| CDY70329 | Canola | nucleus | 21.74 | 42.31 |
| CDY45139 | Canola | nucleus | 21.74 | 42.31 |
| KRH52259 | Soybean | nucleus | 28.85 | 39.67 |
| VIT_11s0016g01130.t01 | Wine grape | nucleus | 41.11 | 37.82 |
| KRH05420 | Soybean | nucleus | 34.78 | 36.82 |
| PGSC0003DMT400033852 | Potato | nucleus | 38.34 | 36.74 |
| KRH15596 | Soybean | nucleus | 33.6 | 36.64 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 40.32 | 36.3 |
| Solyc07g041830.2.1 | Tomato | nucleus | 37.15 | 35.61 |
| EES13970 | Sorghum | nucleus | 31.62 | 35.56 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 30.04 | 34.55 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 30.04 | 34.55 |
| PGSC0003DMT400014271 | Potato | nucleus | 33.99 | 33.46 |
| Solyc05g025900.2.1 | Tomato | nucleus | 33.2 | 33.33 |
| KRH61588 | Soybean | extracellular, nucleus | 27.27 | 33.17 |
| Os08t0458200-01 | Rice | nucleus | 30.04 | 32.76 |
| KRH19323 | Soybean | nucleus | 30.04 | 32.48 |
| Zm00001d032058_P002 | Maize | nucleus | 31.23 | 32.24 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 28.06 | 31.98 |
| CDY16606 | Canola | nucleus | 30.43 | 31.56 |
| Bra006598.1-P | Field mustard | nucleus | 29.64 | 31.25 |
| CDX70969 | Canola | nucleus | 29.25 | 31.22 |
| CDY09110 | Canola | nucleus | 30.43 | 30.92 |
| Bra020159.1-P | Field mustard | nucleus | 30.43 | 30.92 |
| CDX88821 | Canola | nucleus | 29.25 | 30.71 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 31.62 | 30.3 |
| CDX92393 | Canola | nucleus | 29.64 | 30.12 |
| Bra002375.1-P | Field mustard | nucleus | 29.64 | 30.12 |
| Solyc08g061490.2.1 | Tomato | nucleus | 22.92 | 29.0 |
| PGSC0003DMT400062692 | Potato | nucleus | 22.92 | 29.0 |
| KRH02606 | Soybean | plastid | 29.25 | 27.01 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 28.46 | 22.86 |
| AT3G43850.1 | Thale cress | nucleus | 22.53 | 21.11 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P27430_001 | EnsemblPlants:GSMUA_Achr9T27430_001 | EnsemblPlantsGene:GSMUA_Achr9G27430_001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF14 | SEG:seg |
| UniParc:UPI0002958A63 | UniProt:M0U400 | MapMan:35.2 | : | : | : |
Description
MTD1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G27430_001]
Coordinates
chr9:+:31623081..31626449
Molecular Weight (calculated)
26758.2 Da
IEP (calculated)
9.451
GRAVY (calculated)
-0.535
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIALEKRGD IGRSGLLQRP ACFPIYEVPE AAARLAVAGD GGEDSCSSSS IGRNSDLSAG GSGSDGGEAE VQSRLKGPLE TMDALEDSLP LRRGISKFYT
101: GKSKSFTSFV DAKSSSSCKD LAKSENAYTR KRKNLLAFSV LSDKSSKLGN MEGRISKRPA SSSRSMLSPI LNSASSSSNS FSSEEDNVLG HLLPPPHHQG
201: KYSGDATSAT AVSLSTTPFG SSPMRSFSVT DLHGILRSSS IQIQTRDDHK KNQ
101: GKSKSFTSFV DAKSSSSCKD LAKSENAYTR KRKNLLAFSV LSDKSSKLGN MEGRISKRPA SSSRSMLSPI LNSASSSSNS FSSEEDNVLG HLLPPPHHQG
201: KYSGDATSAT AVSLSTTPFG SSPMRSFSVT DLHGILRSSS IQIQTRDDHK KNQ
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.