Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g06410.t01 | |
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G43850.1 | VIT_01s0011g06410.t01 | AT2G01950.1 | 19000166 |
| AT5G21940.1 | VIT_18s0072g01030.t01 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g01130.t01 | Wine grape | nucleus | 53.74 | 54.91 |
| KRH05420 | Soybean | nucleus | 45.55 | 53.56 |
| CDY72322 | Canola | nucleus | 23.84 | 51.54 |
| Bra027841.1-P | Field mustard | nucleus | 23.84 | 51.54 |
| CDY45139 | Canola | nucleus | 23.84 | 51.54 |
| Bra023734.1-P | Field mustard | nucleus | 23.49 | 50.77 |
| CDY70329 | Canola | nucleus | 23.49 | 50.77 |
| CDY30897 | Canola | nucleus, plastid | 16.73 | 50.0 |
| KRH15596 | Soybean | nucleus | 40.93 | 49.57 |
| CDY00605 | Canola | nucleus | 22.78 | 49.23 |
| KRH52259 | Soybean | nucleus | 31.67 | 48.37 |
| KRH61588 | Soybean | extracellular, nucleus | 30.61 | 41.35 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 36.3 | 40.32 |
| Solyc08g061490.2.1 | Tomato | nucleus | 28.47 | 40.0 |
| PGSC0003DMT400062692 | Potato | nucleus | 28.47 | 40.0 |
| CDX70969 | Canola | nucleus | 33.45 | 39.66 |
| CDY09110 | Canola | nucleus | 34.52 | 38.96 |
| CDX92393 | Canola | nucleus | 34.52 | 38.96 |
| Bra020159.1-P | Field mustard | nucleus | 34.52 | 38.96 |
| Bra002375.1-P | Field mustard | nucleus | 34.52 | 38.96 |
| Bra006598.1-P | Field mustard | nucleus | 32.38 | 37.92 |
| CDY16606 | Canola | nucleus | 32.74 | 37.7 |
| CDX88821 | Canola | nucleus | 32.03 | 37.34 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 33.81 | 35.98 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 27.4 | 35.0 |
| EES13970 | Sorghum | nucleus | 27.76 | 34.67 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 29.18 | 34.31 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 25.98 | 33.18 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 25.98 | 32.88 |
| Os08t0458200-01 | Rice | nucleus | 25.98 | 31.47 |
| Zm00001d032058_P002 | Maize | nucleus | 26.33 | 30.2 |
| AT3G43850.1 | Thale cress | nucleus | 25.62 | 26.67 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 28.47 | 25.4 |
Protein Annotations
| ArrayExpress:VIT_04s0008g02000 | EMBL:AM447570 | EMBL:FN595231 | EnsemblPlants:VIT_04s0008g02000.t01 | EnsemblPlantsGene:VIT_04s0008g02000 | EntrezGene:100260963 |
| EntrezGene:LOC100260963 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF6 | ProteinID:CAN82883 | ProteinID:CAN82883.1 | ProteinID:CCB46613 |
| ProteinID:CCB46613.1 | RefSeq:XP_002281841 | RefSeq:XP_002281841.1 | SEG:seg | TIGR:TC70829 | UniParc:UPI00015241A3 |
| UniProt:A5B5R8 | wikigene:100260963 | wikigene:LOC100260963 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr4:-:1633362..1636330
Molecular Weight (calculated)
30298.0 Da
IEP (calculated)
7.890
GRAVY (calculated)
-0.660
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIALDRSSN RIEGSGFMHG MSCISIFESP ELLTGDRRFP AGGEMAAKAE EREEELDSCS SSSSIGKNSD VSGMSSDQED SGETEVQSSY KRPLDSMNAL
101: EEVLPLRRGI SRFYNGKSKS FTSLADASTS ASCKDLAKPE NAYNRRRRNL LAYNHVLDKN RNFPLRSNGG GISKKLAATS RSTLALAVAM SSSDSNNSSE
201: DLNSSLNCIS RSPSLLLPPL HPQARLYHNN VSSSPPQRNL SAWRSYSLAD LQQCATSGTT NATSSPISRG ADDHSKANLS N
101: EEVLPLRRGI SRFYNGKSKS FTSLADASTS ASCKDLAKPE NAYNRRRRNL LAYNHVLDKN RNFPLRSNGG GISKKLAATS RSTLALAVAM SSSDSNNSSE
201: DLNSSLNCIS RSPSLLLPPL HPQARLYHNN VSSSPPQRNL SAWRSYSLAD LQQCATSGTT NATSSPISRG ADDHSKANLS N
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.