Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G21940.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT5G21940.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006598.1-P | Field mustard | nucleus | 97.1 | 97.5 |
| CDX70969 | Canola | nucleus | 82.99 | 84.39 |
| CDY16606 | Canola | nucleus | 69.71 | 68.85 |
| CDX92393 | Canola | nucleus | 68.88 | 66.67 |
| CDY09110 | Canola | nucleus | 68.46 | 66.27 |
| AT5G21940.1 | Thale cress | nucleus, plastid | 69.29 | 63.26 |
| CDY70329 | Canola | nucleus | 28.22 | 52.31 |
| CDY45139 | Canola | nucleus | 27.8 | 51.54 |
| CDY00605 | Canola | nucleus | 27.39 | 50.77 |
| CDY72322 | Canola | nucleus | 26.97 | 50.0 |
| CDY30897 | Canola | nucleus, plastid | 18.67 | 47.87 |
| KRH52259 | Soybean | nucleus | 33.2 | 43.48 |
| KRH15596 | Soybean | nucleus | 39.42 | 40.95 |
| KRH05420 | Soybean | nucleus | 38.59 | 38.91 |
| KRH61588 | Soybean | extracellular, nucleus | 30.29 | 35.1 |
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 37.34 | 32.03 |
| EES13970 | Sorghum | nucleus | 29.05 | 31.11 |
| Solyc08g061490.2.1 | Tomato | nucleus | 24.48 | 29.5 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 30.71 | 29.25 |
| PGSC0003DMT400062692 | Potato | nucleus | 24.07 | 29.0 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 26.56 | 28.83 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 25.73 | 28.18 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 25.73 | 28.18 |
| Zm00001d032058_P002 | Maize | nucleus | 28.63 | 28.16 |
| Os08t0458200-01 | Rice | nucleus | 26.56 | 27.59 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 26.97 | 27.2 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 26.97 | 20.63 |
Protein Annotations
| EnsemblPlants:CDX88821 | EnsemblPlantsGene:GSBRNA2T00148895001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF6 | ProteinID:CDX88821 | ProteinID:CDX88821.1 |
| SEG:seg | UniParc:UPI0004EE093E | MapMan:35.2 | : | : | : |
Description
BnaA03g08280D
Coordinates
chrLK031856:+:1094872..1095878
Molecular Weight (calculated)
25605.7 Da
IEP (calculated)
7.954
GRAVY (calculated)
-0.620
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTEMDRIES YVLNVSGDHL YDRSSSESFS SPSSSIGRNS DDDDHDGEDG VGENEAESPY KCPLDLMESL EEALPVRKGI SKYYNGKSKS FTNLAAGAAS
101: ALASSSSMKD VAKPENPYGR RRRNLLCHQI WENKKTTPRG RISKKQMMSS SRSALALAMA VAAGVLAGEG SSSGGDSSTG TSPTISGSLP RKMMLPPLHP
201: RSQGSSGNLK SSGFCAWRSY SVADIPRCFP TTANGIGSTD S
101: ALASSSSMKD VAKPENPYGR RRRNLLCHQI WENKKTTPRG RISKKQMMSS SRSALALAMA VAAGVLAGEG SSSGGDSSTG TSPTISGSLP RKMMLPPLHP
201: RSQGSSGNLK SSGFCAWRSY SVADIPRCFP TTANGIGSTD S
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.