Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g02000.t01 | Wine grape | nucleus | 54.91 | 53.74 |
| Solyc07g041830.2.1 | Tomato | nucleus | 46.18 | 48.11 |
| PGSC0003DMT400033852 | Potato | nucleus | 45.82 | 47.73 |
| Solyc05g025900.2.1 | Tomato | nucleus | 40.36 | 44.05 |
| KRH19323 | Soybean | nucleus | 37.45 | 44.02 |
| PGSC0003DMT400014271 | Potato | nucleus | 41.09 | 43.97 |
| GSMUA_Achr9P27430_001 | Banana | nucleus | 37.82 | 41.11 |
| KRH02606 | Soybean | plastid | 37.45 | 37.59 |
| GSMUA_Achr3P07970_001 | Banana | nucleus | 32.36 | 37.24 |
| EES13970 | Sorghum | nucleus | 26.91 | 32.89 |
| TraesCS5D01G216000.1 | Wheat | nucleus | 25.82 | 32.27 |
| TraesCS5B01G207800.1 | Wheat | nucleus | 25.45 | 31.82 |
| Os08t0458200-01 | Rice | nucleus | 26.18 | 31.03 |
| TraesCS5A01G209700.1 | Wheat | nucleus | 24.36 | 30.18 |
| Zm00001d032058_P002 | Maize | nucleus | 26.18 | 29.39 |
| HORVU5Hr1G061730.2 | Barley | endoplasmic reticulum, extracellular | 27.27 | 23.81 |
Protein Annotations
| ArrayExpress:VIT_11s0016g01130 | EMBL:AM431903 | EMBL:FN595756 | EnsemblPlants:VIT_11s0016g01130.t01 | EnsemblPlantsGene:VIT_11s0016g01130 | EntrezGene:100264608 |
| EntrezGene:LOC100264608 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF14 | ProteinID:CAN82449 | ProteinID:CAN82449.1 | ProteinID:CCB51401 |
| ProteinID:CCB51401.1 | RefSeq:XP_002278077 | RefSeq:XP_002278077.1 | SEG:seg | unigene:Vvi.21667 | UniParc:UPI00015C830F |
| UniProt:F6HGT7 | wikigene:100264608 | wikigene:LOC100264608 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr11:+:916956..919960
Molecular Weight (calculated)
29247.4 Da
IEP (calculated)
6.140
GRAVY (calculated)
-0.684
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIAFESGGG SGIERSGFVH GMSCISIFDS PEAGVFSSDR RFPSGVEERE EGLDSCSSSS IGRNSDASGG SSEGEDSGET EVQSSYKGPL ETMDALEDVL
101: VVKKSISKFY NGKSKSFTSL ADVSASSSVK DLAKPENAYA KKRKNLLAYS NFWDKNRNCP WRSNAGGISK RPLISSRSTL ALAVTMSSSE SGNYCDDSNC
201: SSNLSSSHSP SLPPLHPQAK KSSNNAPSSS PPSQQKFPPW RSFSLSDLQG MDAATPGITG LAGNNNRERD NELQH
101: VVKKSISKFY NGKSKSFTSL ADVSASSSVK DLAKPENAYA KKRKNLLAYS NFWDKNRNCP WRSNAGGISK RPLISSRSTL ALAVTMSSSE SGNYCDDSNC
201: SSNLSSSHSP SLPPLHPQAK KSSNNAPSSS PPSQQKFPPW RSFSLSDLQG MDAATPGITG LAGNNNRERD NELQH
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.