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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 2
  • endoplasmic reticulum 1
  • nucleus 1
  • plasma membrane 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, nucleus, plasma membrane
BaCelLo:cytosol
EpiLoc:endoplasmic reticulum
MultiLoc:nucleus
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
 nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_11s0052g00320.t01 Wine grape plasma membrane 76.23 76.3
KRH12351 Soybean cytosol, nucleus, peroxisome 75.12 75.05
KRH37353 Soybean plasma membrane 75.02 74.75
GSMUA_AchrUn_... Banana plasma membrane 35.8 73.3
KRH02761 Soybean cytosol, nucleus, peroxisome 71.79 71.99
AT4G29900.1 Thale cress plasma membrane 71.14 71.94
CDY20693 Canola cytosol 70.95 71.68
CDX68595 Canola plasma membrane 70.03 71.55
CDY43534 Canola cytosol 70.12 71.51
AT5G57110.2 Thale cress plasma membrane 70.95 71.42
CDY38264 Canola plasma membrane 70.86 71.39
CDY46716 Canola cytosol 70.86 71.39
Bra024117.1-P Field mustard plasma membrane 70.03 71.35
Bra002762.1-P Field mustard plasma membrane 70.77 71.3
CDY30184 Canola plasma membrane 70.03 71.28
Bra035649.1-P Field mustard cytosol 70.77 71.1
Bra011144.1-P Field mustard cytosol 70.21 71.0
KRH19116 Soybean cytosol 70.4 70.86
Solyc03g123890.2.1 Tomato plasma membrane 67.72 69.91
Os02t0176700-00 Rice plasma membrane 59.67 69.88
TraesCS6A01G152700.2 Wheat cytosol 70.58 69.74
TraesCS6D01G142400.1 Wheat cytosol, nucleus, plasma membrane 70.49 69.72
Os04t0605500-02 Rice plasma membrane 70.03 69.58
HORVU6Hr1G030590.16 Barley cytosol, nucleus, plasma membrane 70.31 69.53
TraesCS6B01G180700.3 Wheat cytosol, nucleus, plasma membrane 70.49 69.46
TraesCS2A01G432700.1 Wheat plastid, unclear 69.1 69.1
HORVU2Hr1G101040.4 Barley plasma membrane 69.29 69.1
TraesCS2D01G430700.1 Wheat plasma membrane 68.92 69.05
EES12809 Sorghum plasma membrane 69.57 68.86
Zm00001d002396_P012 Maize nucleus, plasma membrane, plastid 69.1 68.85
KXG29596 Sorghum cytosol, nucleus, plasma membrane 69.38 68.74
TraesCS2B01G454000.1 Wheat plasma membrane 68.92 68.29
Os08t0517200-02 Rice plasma membrane 32.65 68.28
CDY32902 Canola plasma membrane 70.86 68.27
EES15337 Sorghum cytosol, nucleus, plasma membrane 67.99 67.62
TraesCS7D01G252900.4 Wheat cytosol 67.25 67.13
TraesCS7A01G254400.1 Wheat plasma membrane 67.07 66.94
TraesCS5D01G284100.3 Wheat plasma membrane 66.51 66.88
TraesCS5B01G276500.1 Wheat plasma membrane 66.33 66.64
HORVU7Hr1G052560.3 Barley cytosol, peroxisome, plasma membrane 66.61 66.54
CDY53981 Canola cytosol 70.95 66.23
EER99121 Sorghum cytosol, peroxisome, plasma membrane 65.31 65.67
TraesCS5A01G276700.4 Wheat plasma membrane 66.7 65.61
TraesCS7B01G150600.7 Wheat plasma membrane 65.68 65.56
Solyc01g097400.1.1 Tomato cytosol 16.0 62.91
Zm00001d026253_P002 Maize peroxisome, plasma membrane, plastid 63.74 62.41
Zm00001d031543_P005 Maize cytosol 63.83 62.11
HORVU5Hr1G075050.19 Barley plastid 65.12 61.54
Zm00001d015446_P016 Maize plasma membrane 63.92 61.48
Zm00001d020985_P002 Maize cytosol, peroxisome, plasma membrane 63.46 59.97
Solyc10g079300.1.1 Tomato plasma membrane 43.85 50.48
Solyc04g077870.2.1 Tomato plasma membrane 46.35 49.31
Solyc02g092450.2.1 Tomato nucleus, unclear 46.07 48.97
Solyc02g064680.2.1 Tomato nucleus, unclear 45.98 48.87
Solyc04g016260.2.1 Tomato unclear 46.35 48.03
Solyc09g082890.1.1 Tomato peroxisome, plasma membrane 15.63 44.01
Solyc09g082870.1.1 Tomato plasma membrane 35.34 35.44
Solyc07g065300.1.1 Tomato plasma membrane 27.1 30.08
Solyc07g022790.2.1 Tomato plasma membrane 10.36 28.28
Solyc01g096190.2.1 Tomato plasma membrane 27.1 27.96
Solyc11g072880.1.1 Tomato nucleus, plastid, unclear 27.38 27.9
Solyc07g022780.2.1 Tomato mitochondrion 9.25 27.32
Protein Annotations
Gene3D:1.20.1110.10Gene3D:1.20.5.170Gene3D:2.70.150.10MapMan:24.1.2.2.2Gene3D:3.40.1110.10Gene3D:3.40.50.1000
InterPro:ATPase_P-typ_P_siteInterPro:ATPase_P-typ_TM_dom_sfInterPro:ATPase_P-typ_cation-transptr_CInterPro:ATPase_P-typ_cation-transptr_NInterPro:ATPase_P-typ_cyto_dom_NInterPro:ATPase_P-typ_transduc_dom_A_sf
InterPro:Ca_ATPase_N_domGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005388
GO:GO:0005488GO:GO:0005515GO:GO:0005516GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005886GO:GO:0005887GO:GO:0006810GO:GO:0006811GO:GO:0006816
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0043231GO:GO:0070588
GO:GO:0099132InterPro:HAD-like_sfInterPro:HAD_sfInterPro:IPR023214InterPro:IPR023299UniProt:K4CBV1
InterPro:P-type_ATPase_IIBPFAM:PF00122PFAM:PF00689PFAM:PF00690PFAM:PF00702PFAM:PF12515
PRINTS:PR00119PRINTS:PR00120ScanProsite:PS00154PANTHER:PTHR24093PANTHER:PTHR24093:SF416InterPro:P_typ_ATPase
SMART:SM00831SUPFAM:SSF56784SUPFAM:SSF81653SUPFAM:SSF81660SUPFAM:SSF81665EnsemblPlantsGene:Solyc07g008320.2
EnsemblPlants:Solyc07g008320.2.1TIGRFAMs:TIGR01494TIGRFAMs:TIGR01517TMHMM:TMhelixUniParc:UPI000276B3FDSEG:seg
Description
Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:K4CBV1]
Coordinates
chr7:-:3079524..3097721
Molecular Weight (calculated)
117931.0 Da
IEP (calculated)
6.936
GRAVY (calculated)
0.082
Length
1081 amino acids
Sequence
(BLAST)
0001: MSEENVKGSP YRRHQNEDLE AGSSSKSIDD DCGSPFDIPR TKSAPIDRLK RWRQAALVLN ASRRFRYTLD LKKEEERKQL IAKIRTHAQV IRAAVLFQEA
0101: GKAVNGDGSL QRLPPTTPSL GEFDISQEEL TFMSREHDVT ALQNCGGVKG VSEKLKTNLD KGIDGDEVDL LKRKNAYGSN TYPRKKGRSF WRFVWEACCD
0201: TTLIILMVAA AASLALGIKT EGIKEGWYDG GSIALAVIIV IVVTAVSDYK QSLQFQNLNE EKQNIQIEVV RGGRRIPVSI FDVVVGDVVP LKIGDQVPAD
0301: GILISGQSLA LDESSMTGES KIVHKDSKSP FLMSGCKVAD GYGMMLVVGV GINTEWGLLM ASITEDNGEE TPLQVRLNGV ATFIGIVGLT VALLVLIVLM
0401: IRFFTGHTYN PDGSPQFKAG KTKVGKAVDG AIKIFTIAVT IVVVAVPEGL PLAVTLTLAY SMRKMMADKA LVRRLSACET MGSATTICSD KTGTLTLNQM
0501: TVVEVYISGK KIDPPDDRSE VPPTVLSLLH EGVGLNTTGS VFVPQGGGAV EISGSPTEKA ILQWGLNLGM NFDAVRSEAS IIHAFPFNSE KKRGGVAVKL
0601: DSEVHLHWKG AAEIVLSCCT SFIDENGSVV PLGDDKMSLL KEAISNMAAS SLRCVAIAYR PYEVDKVPTE EEIDHWEIPE GDLILLAIVG IKDPCRPGVR
0701: DAVQLCIDAG VKVRMVTGDN LQTARAIALE CGILRSDADA TEPNLIEGKR FRAMSDEERK NVADKISVMG RSSPNDKLLL VQALRSNGHV VAVTGDGTND
0801: APALHEADIG LAMGIAGTEV AKESSDIIIL DDNFASVVKV VRWGRSVYAN IQKFIQFQLT VNVAALIINV VAAVTAGDVP LNAVQLLWVN LIMDTLGALA
0901: LATEPPTDHL MHREPVGRRE PLVTNIMWRN LLIQALYQVS VLLVLNFRGK QILHLDHETS ARAIEVKNTL IFNAFVFCQV FNEFNARKPD EMNVFKGVLK
1001: NRLFVSIVGL TVVLQVIIIF FLGKFTSTVR LSWQLWLVSI VIGVISWPLA VLGKLIPVPE KPFSEYFSKK LPKRRNRQEC S
Best Arabidopsis Sequence Match ( AT4G29900.1 )
(BLAST)
0001: MSGQFNNSPR GEDKDVEAGT SSFTEYEDSP FDIASTKNAP VERLRRWRQA ALVLNASRRF RYTLDLKREE DKKQMLRKMR AHAQAIRAAH LFKAAASRVT
0101: GIASPLPTPG GGDFGIGQEQ IVSISRDQNI GALQELGGVR GLSDLLKTNL EKGIHGDDDD ILKRKSAFGS NTYPQKKGRS FWRFVWEASQ DLTLIILIVA
0201: AVASLALGIK TEGIEKGWYD GISIAFAVLL VIVVTATSDY RQSLQFQNLN EEKRNIRLEV TRDGRRVEIS IYDIVVGDVI PLNIGDQVPA DGVLVAGHSL
0301: AVDESSMTGE SKIVQKNSTK HPFLMSGCKV ADGNGTMLVT GVGVNTEWGL LMASVSEDNG GETPLQVRLN GVATFIGIVG LTVAGVVLFV LVVRYFTGHT
0401: KNEQGGPQFI GGKTKFEHVL DDLVEIFTVA VTIVVVAVPE GLPLAVTLTL AYSMRKMMAD KALVRRLSAC ETMGSATTIC SDKTGTLTLN EMTVVECYAG
0501: LQKMDSPDSS SKLPSAFTSI LVEGIAHNTT GSVFRSESGE IQVSGSPTER AILNWAIKLG MDFDALKSES SAVQFFPFNS EKKRGGVAVK SPDSSVHIHW
0601: KGAAEIVLGS CTHYMDESES FVDMSEDKMG GLKDAIDDMA ARSLRCVAIA FRTFEADKIP TDEEQLSRWE LPEDDLILLA IVGIKDPCRP GVKNSVLLCQ
0701: QAGVKVRMVT GDNIQTAKAI ALECGILASD SDASEPNLIE GKVFRSYSEE ERDRICEEIS VMGRSSPNDK LLLVQSLKRR GHVVAVTGDG TNDAPALHEA
0801: DIGLAMGIQG TEVAKEKSDI IILDDNFESV VKVVRWGRSV YANIQKFIQF QLTVNVAALV INVVAAISAG EVPLTAVQLL WVNLIMDTLG ALALATEPPT
0901: DHLMDRAPVG RREPLITNIM WRNLFIQAMY QVTVLLILNF RGISILHLKS KPNAERVKNT VIFNAFVICQ VFNEFNARKP DEINIFRGVL RNHLFVGIIS
1001: ITIVLQVVIV EFLGTFASTT KLDWEMWLVC IGIGSISWPL AVIGKLIPVP ETPVSQYFRI NRWRRNSSG
Arabidopsis Description
ACA10Calcium-transporting ATPase 10, plasma membrane-type [Source:UniProtKB/Swiss-Prot;Acc:Q9SZR1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.