Factsheet for Solyc11g072880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:

cytosol 1
endoplasmic reticulum 2
peroxisome 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040184	Potato	plasma membrane	97.55	97.55
CDY06279	Canola	plasma membrane	29.88	84.53
VIT_06s0004g03900.t01	Wine grape	plasma membrane	83.22	83.22
Os05t0120700-01	Rice	plasma membrane	21.87	82.56
KRG95874	Soybean	endoplasmic reticulum	80.96	81.04
AT1G07810.1	Thale cress	plasma membrane	80.77	80.77
AT1G07670.2	Thale cress	plasma membrane	80.68	80.68
CDX95122	Canola	cytosol, plasma membrane, vacuole	23.19	80.39
KRH67591	Soybean	endoplasmic reticulum	80.3	80.38
Bra031583.1-P	Field mustard	plasma membrane	72.48	79.77
Bra031593.1-P	Field mustard	plasma membrane	79.45	79.53
CDY06268	Canola	plasma membrane	76.44	79.51
CDY09907	Canola	plasma membrane	76.25	79.47
CDY28053	Canola	plasma membrane	78.04	76.1
EER92445	Sorghum	plasma membrane	75.78	75.78
TraesCS1B01G060700.1	Wheat	golgi	75.4	75.69
CDY22720	Canola	peroxisome, plasma membrane	71.82	75.67
TraesCS1D01G047900.1	Wheat	plasma membrane	75.12	75.62
HORVU1Hr1G007310.1	Barley	plasma membrane	74.74	75.6
TraesCS1A01G047000.1	Wheat	plasma membrane	75.31	75.59
Zm00001d028687_P001	Maize	extracellular, mitochondrion	75.49	75.49
Os03t0281600-01	Rice	plasma membrane	59.85	75.15
Zm00001d047769_P001	Maize	plasma membrane	75.21	75.14
GSMUA_Achr6P15410_001	Banana	plasma membrane	63.15	74.86
CDY35928	Canola	plasma membrane	73.33	74.66
TraesCS4B01G201500.2	Wheat	golgi	74.65	74.58
TraesCS4A01G103000.2	Wheat	unclear	74.65	74.58
TraesCS4D01G202200.2	Wheat	plasma membrane	74.55	74.48
EES18919	Sorghum	plasma membrane	74.08	74.29
GSMUA_Achr2P16100_001	Banana	plasma membrane	63.52	74.07
Zm00001d011013_P001	Maize	plasma membrane	73.23	73.86
CDY68458	Canola	cytosol, peroxisome, plasma membrane	45.33	72.22
HORVU4Hr1G058210.4	Barley	plastid	71.91	70.45
Bra029645.1-P	Field mustard	plasma membrane, plastid	78.89	70.1
GSMUA_Achr3P17740_001	Banana	plasma membrane	67.2	69.97
GSMUA_Achr10P...	Banana	plasma membrane	58.81	69.96
CDY61305	Canola	cytosol	31.29	68.17
Solyc01g096190.2.1	Tomato	plasma membrane	65.79	66.6
Solyc07g022790.2.1	Tomato	plasma membrane	20.08	53.79
Solyc07g022780.2.1	Tomato	mitochondrion	14.7	42.62
Solyc01g097400.1.1	Tomato	cytosol	9.52	36.73
Solyc10g079300.1.1	Tomato	plasma membrane	25.92	29.29
Solyc04g077870.2.1	Tomato	plasma membrane	27.52	28.74
Solyc02g092450.2.1	Tomato	nucleus, unclear	27.05	28.22
Solyc02g064680.2.1	Tomato	nucleus, unclear	26.96	28.12
Solyc03g123890.2.1	Tomato	plasma membrane	27.14	27.51
Solyc07g008320.2.1	Tomato	nucleus	27.9	27.38
Solyc04g016260.2.1	Tomato	unclear	26.67	27.13
Solyc09g082870.1.1	Tomato	plasma membrane	20.83	20.5
Solyc07g065300.1.1	Tomato	plasma membrane	18.76	20.43
Solyc09g082890.1.1	Tomato	peroxisome, plasma membrane	6.69	18.49

Protein Annotations

Gene3D:1.20.1110.10	Gene3D:2.70.150.10	MapMan:24.1.2.2.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_C	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
InterPro:IPR023299	UniProt:K4DAZ4	PFAM:PF00122	PFAM:PF00689	PFAM:PF00690	PFAM:PF00702
PRINTS:PR00119	ScanProsite:PS00154	PANTHER:PTHR42861	PANTHER:PTHR42861:SF3	InterPro:P_typ_ATPase	SMART:SM00831
SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81660	SUPFAM:SSF81665	EnsemblPlantsGene:Solyc11g072880.1	EnsemblPlants:Solyc11g072880.1.1
TIGRFAMs:TIGR01494	TMHMM:TMhelix	UniParc:UPI0002769E4F	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:56047840..56053035

Molecular Weight (calculated)

116148.0 Da

IEP (calculated)

5.143

GRAVY (calculated)

0.024

Length

1061 amino acids

Sequence
(BLAST)

0001: MGKGGENYGK RENLGGKSVS DKEMFPAWSK DVKECEEKFE VKRDYGLSED EVVKRRQIYG LNELEKHEGQ SILRLILDQF NDTLVRILLG AAVISFVLAW
0101: LDGEEGGEKE ITAFVEPLVI FLILIVNAAV GVWQESNAEK ALEALKEIQS ETACVIRDGK RISSLPAKEL VPGDIVELKV GDKVPADMRV LRLISSTLRL
0201: EQGSLTGESE AVSKTTKAVA EDVDIQGKKC MVFAGTTVVN GNCICLVTQI GMDTEIGKVH AQIHEAAQEE EDTPLKKKLN EFGEALTVII GIICALVWLI
0301: NVKYFLTWEF VDGWPRNFKF SFEKCTYYFE IAVALAVAAI PEGLPAVITT CLALGTRKMA AKNALVRKLP SVETLGCTTV ICSDKTGTLT TNQMAVSKLV
0401: AMGAKANTLR SFNVEGTSYD PYDGKIQDWS MGRMDSNLEM IAKVAAVCND SGVEKSGQHY VASGLPTEAA LKVLVEKMGL PDGISSISSS SDKDGLRCSY
0501: TWNNIEKRIG TLEFDRDRKS MGVITSSTSG KKSLLVKGAV ENLLERSSYV QLQDGSVVEL DNSSRNHILQ SLHEMSSKAL RVLGFAYKED LQELATYNGD
0601: EDHPAHQLLL NPANYPSIES KLIFVGLAGI RDPPRKEVRR AIEDCREAGI RVMVITGDNK NTAEAICREI GVFGSHEDIK SRSLTGKEFM ELANPKAHIR
0701: QSGGLLFSRA EPRHKQDIVR LLKDDGEVVA MTGDGVNDAP ALKLADIGIA MGIAGTEVAK EASDMVLADD NFSTIVAAVG EGRSIYNNMK AFIRYMISSN
0801: IGEVASIFLT AALGIPEGLI PVQLLWVNLV TDGPPATALG FNPPDKDIMK KQPRRSDDSL ISAWILFRYL VIGLYVGVAT VGIFIIWFTH DSFLGIDLSK
0901: DGHSLVTYSQ LANWGQCKTW NNFTASPFTA GSEVIRFDNP CDYFVEGKVK AMTLSLSVLV AIEMFNSLNA LSEDGSLLSM PPWVNPWLLL AMSVSFGLHF
1001: LILYVPFLAQ IFGIVPLSLN EWLLVLAVAL PVILIDEILK FIGRCTSGTR SGRSPTKQKE E

Best Arabidopsis Sequence Match ( AT1G07670.1 )
(BLAST)

0001: MGKGGEDCGN KQTNSSELVK SDTFPAWGKD VSECEEKFGV SREKGLSTDE VLKRHQIYGL NELEKPEGTS IFKLILEQFN DTLVRILLAA AVISFVLAFF
0101: DGDEGGEMGI TAFVEPLVIF LILIVNAIVG IWQETNAEKA LEALKEIQSQ QATVMRDGTK VSSLPAKELV PGDIVELRVG DKVPADMRVV ALISSTLRVE
0201: QGSLTGESEA VSKTTKHVDE NADIQGKKCM VFAGTTVVNG NCICLVTDTG MNTEIGRVHS QIQEAAQHEE DTPLKKKLNE FGEVLTMIIG LICALVWLIN
0301: VKYFLSWEYV DGWPRNFKFS FEKCTYYFEI AVALAVAAIP EGLPAVITTC LALGTRKMAQ KNALVRKLPS VETLGCTTVI CSDKTGTLTT NQMAVSKLVA
0401: MGSRIGTLRS FNVEGTSFDP RDGKIEDWPT GRMDANLQMI AKIAAICNDA NVEKSDQQFV SRGMPTEAAL KVLVEKMGFP EGLNEASSDG NVLRCCRLWS
0501: ELEQRIATLE FDRDRKSMGV MVDSSSGKKL LLVKGAVENV LERSTHIQLL DGSTRELDQY SRDLILQSLH DMSLSALRCL GFAYSDVPSD FATYDGSEDH
0601: PAHQQLLNPS NYSSIESNLV FVGFVGLRDP PRKEVRQAIA DCRTAGIRVM VITGDNKSTA EAICREIGVF EADEDISSRS LTGKEFMDVK DQKNHLRQTG
0701: GLLFSRAEPK HKQEIVRLLK EDGEVVAMTG DGVNDAPALK LADIGVAMGI SGTEVAKEAS DLVLADDNFS TIVAAVGEGR SIYNNMKAFI RYMISSNIGE
0801: VASIFLTAAL GIPEGMIPVQ LLWVNLVTDG PPATALGFNP PDKDIMKKPP RRSDDSLITA WILFRYMVIG LYVGVATVGV FIIWYTHNSF MGIDLSQDGH
0901: SLVSYSQLAH WGQCSSWEGF KVSPFTAGSQ TFSFDSNPCD YFQQGKIKAS TLSLSVLVAI EMFNSLNALS EDGSLVTMPP WVNPWLLLAM AVSFGLHFVI
1001: LYVPFLAQVF GIVPLSLNEW LLVLAVSLPV ILIDEVLKFV GRCTSGYRYS PRTPSAKQKE E

Arabidopsis Description

ECA4Calcium-transporting ATPase 4, endoplasmic reticulum-type [Source:UniProtKB/Swiss-Prot;Acc:Q9XES1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.