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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 1
  • endoplasmic reticulum 2
  • golgi 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, endoplasmic reticulum, golgi, mitochondrion, plasma membrane
BaCelLo:cytosol
EpiLoc:endoplasmic reticulum
MultiLoc:golgi
Plant-mPloc:endoplasmic reticulum
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 nucleus: 21132161
endoplasmic reticulum: 23041469
extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 25724908 doi
VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith
From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG95874 Soybean endoplasmic reticulum 97.74 97.74
Os05t0120700-01 Rice plasma membrane 22.36 84.34
CDY06279 Canola plasma membrane 29.62 83.73
VIT_08s0040g02830.t01 Wine grape plasma membrane 83.21 82.97
CDX95122 Canola cytosol, plasma membrane, vacuole 23.21 80.39
Solyc11g072880.1.1 Tomato nucleus, plastid, unclear 80.38 80.3
PGSC0003DMT400040184 Potato plasma membrane 80.28 80.21
AT1G07810.1 Thale cress plasma membrane 79.62 79.55
AT1G07670.2 Thale cress plasma membrane 79.53 79.45
CDY06268 Canola plasma membrane 76.04 79.02
Bra031583.1-P Field mustard plasma membrane 71.7 78.84
CDY09907 Canola plasma membrane 75.66 78.78
Bra031593.1-P Field mustard plasma membrane 78.4 78.4
GSMUA_Achr6P15410_001 Banana plasma membrane 65.0 76.98
Zm00001d028687_P001 Maize extracellular, mitochondrion 76.79 76.72
EER92445 Sorghum plasma membrane 76.7 76.63
Zm00001d047769_P001 Maize plasma membrane 76.51 76.37
GSMUA_Achr2P16100_001 Banana plasma membrane 64.91 75.6
TraesCS4A01G103000.2 Wheat unclear 75.66 75.52
TraesCS4B01G201500.2 Wheat golgi 75.57 75.42
Os03t0281600-01 Rice plasma membrane 60.09 75.38
TraesCS4D01G202200.2 Wheat plasma membrane 75.47 75.33
CDY28053 Canola plasma membrane 77.17 75.18
CDY22720 Canola peroxisome, plasma membrane 71.23 74.98
TraesCS1D01G047900.1 Wheat plasma membrane 74.53 74.95
HORVU1Hr1G007310.1 Barley plasma membrane 74.15 74.93
TraesCS1B01G060700.1 Wheat golgi 74.62 74.83
TraesCS1A01G047000.1 Wheat plasma membrane 74.43 74.65
Zm00001d011013_P001 Maize plasma membrane 74.06 74.62
EES18919 Sorghum plasma membrane 74.25 74.39
CDY35928 Canola plasma membrane 73.11 74.38
GSMUA_Achr3P17740_001 Banana plasma membrane 69.15 71.93
GSMUA_Achr10P... Banana plasma membrane 60.28 71.64
CDY68458 Canola cytosol, peroxisome, plasma membrane 45.0 71.62
HORVU4Hr1G058210.4 Barley plastid 72.92 71.38
Bra029645.1-P Field mustard plasma membrane, plastid 77.92 69.18
CDY61305 Canola cytosol 30.66 66.74
KRH06423 Soybean plasma membrane 65.38 65.56
KRH47857 Soybean plasma membrane 65.94 65.14
KRH61432 Soybean plasma membrane 45.0 47.65
KRH47020 Soybean golgi, plasma membrane 21.7 31.21
KRH67272 Soybean peroxisome, plasma membrane 26.32 30.46
KRH23922 Soybean plasma membrane 24.06 29.93
KRH29171 Soybean plasma membrane 26.32 29.34
KRH04436 Soybean cytosol, endoplasmic reticulum, plasma membrane 27.64 28.9
KRH58090 Soybean cytosol 27.55 28.8
KRH33214 Soybean endoplasmic reticulum 28.11 28.79
KRH72028 Soybean cytosol, nucleus, plasma membrane 28.11 28.79
KRH28359 Soybean cytosol, peroxisome, plasma membrane 27.17 28.35
KRH52089 Soybean endoplasmic reticulum, mitochondrion 27.17 28.26
KRH77121 Soybean cytosol, endoplasmic reticulum, peroxisome 26.89 28.11
KRH41701 Soybean mitochondrion 26.13 28.09
KRH61405 Soybean endoplasmic reticulum 26.98 28.07
KRG95209 Soybean plasma membrane 26.89 27.54
KRH66886 Soybean plasma membrane 26.79 27.39
KRH39871 Soybean plasma membrane, plastid 26.89 27.38
KRG93759 Soybean plastid 26.51 27.31
KRG95593 Soybean plasma membrane 27.26 27.03
KRH09610 Soybean plasma membrane 27.26 26.49
KRH23705 Soybean nucleus, plastid 27.45 26.38
KRH44631 Soybean nucleus 27.08 26.28
KRH37353 Soybean plasma membrane 26.79 26.18
KRH19116 Soybean cytosol 26.51 26.16
KRH02761 Soybean cytosol, nucleus, peroxisome 26.51 26.07
KRH12351 Soybean cytosol, nucleus, peroxisome 26.6 26.06
KRH14123 Soybean plasma membrane 16.7 17.2
KRH47024 Soybean cytosol, nucleus, plasma membrane 5.19 15.58
Protein Annotations
Gene3D:1.20.1110.10EntrezGene:100812151Gene3D:2.70.150.10MapMan:24.1.2.2.1Gene3D:3.40.1110.10Gene3D:3.40.50.1000
EMBL:ACUP02002069InterPro:ATPase_P-typ_P_siteInterPro:ATPase_P-typ_TM_dom_sfInterPro:ATPase_P-typ_cation-transptr_CInterPro:ATPase_P-typ_cation-transptr_NInterPro:ATPase_P-typ_cyto_dom_N
InterPro:ATPase_P-typ_transduc_dom_A_sfEnsemblPlantsGene:GLYMA_03G175200GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0016020GO:GO:0016021GO:GO:0016787InterPro:HAD-like_sf
InterPro:HAD_sfUniProt:I1JPG1InterPro:IPR023214InterPro:IPR023299EnsemblPlants:KRH67591ProteinID:KRH67591
ProteinID:KRH67591.1PFAM:PF00122PFAM:PF00689PFAM:PF00690PFAM:PF00702PRINTS:PR00119
ScanProsite:PS00154PANTHER:PTHR42861PANTHER:PTHR42861:SF3InterPro:P_typ_ATPaseSMART:SM00831SUPFAM:SSF56784
SUPFAM:SSF81653SUPFAM:SSF81660SUPFAM:SSF81665TIGRFAMs:TIGR01494TMHMM:TMhelixUniParc:UPI000233A917
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr3:+:38873310..38880087
Molecular Weight (calculated)
116407.0 Da
IEP (calculated)
5.119
GRAVY (calculated)
0.039
Length
1060 amino acids
Sequence
(BLAST)
0001: MGKGGQDYGK RENTSTAPSD REIFKAWAKD VRECEEQFKV NVKVGLNPDE VENRRKIHGL NELEKHDGQS IWSLVLEQFN DTLVRILLVA AIISFVLAWY
0101: DGDEGGEMEI TAFVEPLVIF LILIVNAIVG VWQESNAEKA LDALKEIQSE HAVVIREGAK IPNLPAKELV PGDIVELKVG DKVPADMRVV ELISSTLRLE
0201: QGSLTGESEA VNKTNKRVDE DADIQGKRCM VFAGTTVVNG NSICLVTQTG MDTEIGKVHM QIHVASQSEE DTPLKKKLNE FGEKLTLIIG LICILVWLIN
0301: VKYFLSWEYV DGWPRNFKFS FEKCTYYFEI AVALAVAAIP EGLPAVITTC LALGTRKMAQ KNALVRKLPS VETLGCTTVI CSDKTGTLTT NQMAVAKLVA
0401: VGHNVDTLRA FKVEGTTYNP ADGQIENWPT GGLDANLQMI AKIAAVCNDA GVAQSEHKFV AHGMPTEAAL KVLVEKMGLP EGSKVAPSAS TRTLLRCCEW
0501: WSEHDRRLAT LEFDRDRKSM GVIVDSGLGK RSLLVKGAVE NVLDRSSKIQ LRDGSIVNLD DNARNLVLQA LHEMSTSALR CLGFAYKDEL PKFENYSGND
0601: DHPAHQLMLN PSNYSSIESE LIFVGLVGLR DPPREEVYQA IEDCRDAGIR VMVITGDNKN TAEAICREIG VFSPDEDISS KSLTGRDFME LHDKKAYLRQ
0701: HGGLLFSRAE PRHKQEIVRL LKEEGEVVAM TGDGVNDAPA LKLADIGIAM GIAGTEVAKE ASDMVLADDN FSSIVAAVGE GRSIYNNMKA FIRYMISSNI
0801: GEVASIFLTA ALGIPEGLIP VQLLWVNLVT DGPPATALGF NPPDKDIMKK PPRHSDDSLI NLWILFRYLV IGIYVGLATV GIFIIWYTHG SFFGIDLSGD
0901: GHTLVTYTQL ANWGQCSSWQ NFTASPFTAG AKTITFDNSC DYFSTGKVKA MTLSLSVLVA IEMFNSLNAL SEDGSLLTMP PWVNPWLLLA MSVSFGLHFL
1001: ILYVPFLAQV FGIVPLSFNE WLLVLVVALP VILIDEILKF VGRCTSSRAS SARKSKQKSE
Best Arabidopsis Sequence Match ( AT1G07670.1 )
(BLAST)
0001: MGKGGEDCGN KQTNSSELVK SDTFPAWGKD VSECEEKFGV SREKGLSTDE VLKRHQIYGL NELEKPEGTS IFKLILEQFN DTLVRILLAA AVISFVLAFF
0101: DGDEGGEMGI TAFVEPLVIF LILIVNAIVG IWQETNAEKA LEALKEIQSQ QATVMRDGTK VSSLPAKELV PGDIVELRVG DKVPADMRVV ALISSTLRVE
0201: QGSLTGESEA VSKTTKHVDE NADIQGKKCM VFAGTTVVNG NCICLVTDTG MNTEIGRVHS QIQEAAQHEE DTPLKKKLNE FGEVLTMIIG LICALVWLIN
0301: VKYFLSWEYV DGWPRNFKFS FEKCTYYFEI AVALAVAAIP EGLPAVITTC LALGTRKMAQ KNALVRKLPS VETLGCTTVI CSDKTGTLTT NQMAVSKLVA
0401: MGSRIGTLRS FNVEGTSFDP RDGKIEDWPT GRMDANLQMI AKIAAICNDA NVEKSDQQFV SRGMPTEAAL KVLVEKMGFP EGLNEASSDG NVLRCCRLWS
0501: ELEQRIATLE FDRDRKSMGV MVDSSSGKKL LLVKGAVENV LERSTHIQLL DGSTRELDQY SRDLILQSLH DMSLSALRCL GFAYSDVPSD FATYDGSEDH
0601: PAHQQLLNPS NYSSIESNLV FVGFVGLRDP PRKEVRQAIA DCRTAGIRVM VITGDNKSTA EAICREIGVF EADEDISSRS LTGKEFMDVK DQKNHLRQTG
0701: GLLFSRAEPK HKQEIVRLLK EDGEVVAMTG DGVNDAPALK LADIGVAMGI SGTEVAKEAS DLVLADDNFS TIVAAVGEGR SIYNNMKAFI RYMISSNIGE
0801: VASIFLTAAL GIPEGMIPVQ LLWVNLVTDG PPATALGFNP PDKDIMKKPP RRSDDSLITA WILFRYMVIG LYVGVATVGV FIIWYTHNSF MGIDLSQDGH
0901: SLVSYSQLAH WGQCSSWEGF KVSPFTAGSQ TFSFDSNPCD YFQQGKIKAS TLSLSVLVAI EMFNSLNALS EDGSLVTMPP WVNPWLLLAM AVSFGLHFVI
1001: LYVPFLAQVF GIVPLSLNEW LLVLAVSLPV ILIDEVLKFV GRCTSGYRYS PRTPSAKQKE E
Arabidopsis Description
ECA4Calcium-transporting ATPase 4, endoplasmic reticulum-type [Source:UniProtKB/Swiss-Prot;Acc:Q9XES1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.