CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
endoplasmic reticulum 2
plastid 1
vacuole 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22653
KRH24625
KRH26664
KRH29625

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37640.1	KRH24625	AT4G03290.1	21798944
AT4G37640.1	KRH29625	AT4G03290.1	21798944
AT4G37640.1	KRH22653	AT5G22290.1	21798944
AT4G37640.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77121	Soybean	cytosol, endoplasmic reticulum, peroxisome	96.36	96.55
VIT_07s0129g00180.t01	Wine grape	plasma membrane	85.04	84.79
KRH58090	Soybean	cytosol	84.06	84.22
KRH04436	Soybean	cytosol, endoplasmic reticulum, plasma membrane	83.76	83.92
VIT_07s0129g00110.t01	Wine grape	plasma membrane	44.0	83.55
Bra017841.1-P	Field mustard	plasma membrane	82.48	82.64
CDY29571	Canola	plasma membrane	82.48	82.64
GSMUA_Achr4P10940_001	Banana	cytosol	72.64	82.64
CDY44033	Canola	plasma membrane	82.87	82.63
CDX72644	Canola	plasma membrane	82.28	82.45
CDY22420	Canola	plasma membrane	82.19	82.19
Solyc02g092450.2.1	Tomato	nucleus, unclear	82.09	82.01
PGSC0003DMT400033890	Potato	cytosol, peroxisome, plasma membrane	81.89	81.81
PGSC0003DMT400055192	Potato	plasma membrane	81.89	81.81
Solyc02g064680.2.1	Tomato	nucleus, unclear	81.79	81.71
AT4G37640.1	Thale cress	plasma membrane	81.5	81.66
AT2G22950.1	Thale cress	cytosol, peroxisome, plasma membrane	81.4	81.48
Bra010605.1-P	Field mustard	plasma membrane	82.19	81.07
CDX76883	Canola	plasma membrane	80.91	81.07
Bra039940.1-P	Field mustard	plasma membrane	80.91	81.07
GSMUA_Achr6P16920_001	Banana	cytosol	61.42	81.04
CDY49443	Canola	plasma membrane	80.81	80.97
GSMUA_Achr4P32520_001	Banana	plasma membrane	65.85	80.89
KRH61405	Soybean	endoplasmic reticulum	80.22	79.98
KRH52089	Soybean	endoplasmic reticulum, mitochondrion	79.33	79.1
Os12t0586600-01	Rice	plasma membrane	79.04	78.73
Zm00001d030893_P004	Maize	plasma membrane	78.94	78.63
KXG23838	Sorghum	plasma membrane	78.74	78.43
TraesCS5D01G080700.1	Wheat	plasma membrane	77.85	77.55
TraesCS5A01G068700.1	Wheat	plasma membrane	77.85	77.55
TraesCS5B01G075100.2	Wheat	plasma membrane	77.66	77.35
HORVU5Hr1G018160.3	Barley	cytosol	76.87	75.61
Os03t0616400-01	Rice	plastid	69.78	68.64
EER93815	Sorghum	plastid	69.19	68.05
HORVU4Hr1G013660.3	Barley	plasma membrane, plastid	70.28	68.0
TraesCS4D01G079200.1	Wheat	plasma membrane	69.49	67.24
TraesCS4A01G234700.1	Wheat	plastid	69.49	67.11
Zm00001d033334_P001	Maize	plastid	68.21	67.02
TraesCS4B01G080300.1	Wheat	plastid	69.09	66.73
KRH23922	Soybean	plasma membrane	55.51	66.2
KRG95209	Soybean	plasma membrane	64.07	62.9
KRH39871	Soybean	plasma membrane, plastid	64.27	62.73
KRH66886	Soybean	plasma membrane	63.98	62.68
KRH33214	Soybean	endoplasmic reticulum	63.48	62.32
KRH72028	Soybean	cytosol, nucleus, plasma membrane	63.19	62.03
KRH47020	Soybean	golgi, plasma membrane	36.32	50.07
KRH67272	Soybean	peroxisome, plasma membrane	42.03	46.62
GSMUA_Achr3P30070_001	Banana	cytosol, nucleus, plasma membrane	72.93	45.85
KRH37353	Soybean	plasma membrane	48.13	45.07
KRH12351	Soybean	cytosol, nucleus, peroxisome	47.93	45.01
KRH02761	Soybean	cytosol, nucleus, peroxisome	47.74	44.99
KRH19116	Soybean	cytosol	47.34	44.79
KRH44631	Soybean	nucleus	48.13	44.78
KRH09610	Soybean	plasma membrane	47.93	44.64
KRH41701	Soybean	mitochondrion	42.91	44.22
KRG93759	Soybean	plastid	44.59	44.02
KRH23705	Soybean	nucleus, plastid	47.54	43.79
KRH29171	Soybean	plasma membrane	40.55	43.32
KRG95593	Soybean	plasma membrane	44.19	42.0
KRH47024	Soybean	cytosol, nucleus, plasma membrane	11.61	33.43
KRG95874	Soybean	endoplasmic reticulum	28.44	27.26
KRH67591	Soybean	endoplasmic reticulum	28.35	27.17
KRH06423	Soybean	plasma membrane	27.76	26.68
KRH47857	Soybean	plasma membrane	27.85	26.37
KRH61432	Soybean	plasma membrane	25.89	26.27
KRH14123	Soybean	plasma membrane	24.8	24.49

Protein Annotations

Gene3D:1.20.1110.10	EntrezGene:100792691	Gene3D:2.70.150.10	MapMan:24.1.2.2.2	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000
EMBL:ACUP02006746	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_C	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N
InterPro:ATPase_P-typ_transduc_dom_A_sf	InterPro:Ca_ATPase_N_dom	EnsemblPlantsGene:GLYMA_11G048300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005388	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810
GO:GO:0006811	GO:GO:0006816	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0043231	GO:GO:0070588	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	UniProt:I1LH66
InterPro:IPR023214	InterPro:IPR023299	EnsemblPlants:KRH28359	ProteinID:KRH28359	ProteinID:KRH28359.1	InterPro:P-type_ATPase_IIB
PFAM:PF00122	PFAM:PF00689	PFAM:PF00690	PFAM:PF12515	PFAM:PF13246	PRINTS:PR00119
PRINTS:PR00120	ScanProsite:PS00154	PANTHER:PTHR24093	PANTHER:PTHR24093:SF262	InterPro:P_typ_ATPase	SMART:SM00831
SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81660	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01517
TMHMM:TMhelix	UniParc:UPI00023CD676	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:3601241..3607177

Molecular Weight (calculated)

110845.0 Da

IEP (calculated)

5.900

GRAVY (calculated)

0.146

Length

1016 amino acids

Sequence
(BLAST)

0001: MMESYLNENF EVKSKNSSEE ALQRWRRLCR VVKNPKRRFR FTANLSKRGE AAAMRRTNQE KIRVAVLVSK AALQFILGVQ LSDYKVPEEV EDAGFEICGD
0101: ELGSIVEGHD VKKFRHHGGV NGIAEKLSTS TTEGLNNDTE LLNRRQQIYG INKFTESAAT SFWVFVWEAF QDMTLMILGV CAIVSLLVGI ATEGWPKGAH
0201: DGLGIVASIL LVVFVTATSD YRQSLQFRDL DKEKKKISIQ VTRNGYRQKM SIYELLPGDI VHLAIGDQVP ADGLFVSGFS VLIDESSLTG ESEPVMVSSE
0301: NPFLLSGTKV QDGSCKMLVT SVGMRTQWGK LMATLSEGGD DETPLQVKLN GVATIIGKIG LFFAVVTFAV LVQGLVSQKL QQGSLRSWTG DDALELLEFF
0401: AVAVTIVVVA VPEGLPLAVT LSLAFAMKKM MNDKALVRHL AACETMGSAT TICSDKTGTL TTNHMTVVKT CFCLNSKEVS SNKDSSSLCS ELPEPAVKLL
0501: QQSIFNNTGG EVVINQNGKR EILGTPTEAA ILEFGLSLGG DFQGERQACK LVKVEPFNST KKKMSVVVEL PGGGLRAHCK GASEIILAAC DKVLNSNGEV
0601: VPLDEESTNH LKDTINQFAS EALRTLCLAY VELENGFSTE DPIPVSGYTC IGVVGIKDPV RPGVKESVAM CRSAGITVRM VTGDNINTAK AIARECGILT
0701: DDGIAIEGPE FREKSQKELL ELIPKIQVMA RSSPLDKHTL VKHLRTTFGE VVAVTGDGTN DAPALHEADI GLAMGIAGTE VAKESADVII LDDNFSTIVT
0801: VAKWGRSVYI NIQKFVQFQL TVNVVALIVN FTSACLTGTA PLTAVQLLWV NMIMDTLGAL ALATEPPNDD LMKRSPVGRK GNFISNVMWR NILGQSLYQF
0901: MVIWFLQSRG KSIFLLEGPN SDLVLNTLIF NTFVFCQVFN EINSREMEKI NVFKGILDNY VFVGVISATV FFQIIIVEYL GTFANTTPLT LAQWFFCLLV
1001: GFLGMPIAAR LKKIPV

Best Arabidopsis Sequence Match ( AT4G37640.1 )
(BLAST)

0001: MESYLNENFD VKAKHSSEEV LEKWRNLCGV VKNPKRRFRF TANLSKRYEA AAMRRTNQEK LRIAVLVSKA AFQFISGVSP SDYTVPEDVK AAGFEICADE
0101: LGSIVESHDV KKLKFHGGVD GLAGKLKASP TDGLSTEAAQ LSQRQELFGI NKFAESEMRG FWVFVWEALQ DMTLMILGVC AFVSLIVGIA TEGWPKGSHD
0201: GLGIAASILL VVFVTATSDY RQSLQFRDLD KEKKKITVQV TRNGFRQKLS IYDLLPGDIV HLAIGDQVPA DGLFLSGFSV VIDESSLTGE SEPVMVNAQN
0301: PFLMSGTKVQ DGSCKMMITT VGMRTQWGKL MATLTEGGDD ETPLQVKLNG VATIIGKIGL FFAVVTFAVL VQGMFMRKLS TGTHWVWSGD EALELLEYFA
0401: IAVTIVVVAV PEGLPLAVTL SLAFAMKKMM NDKALVRHLA ACETMGSATT ICSDKTGTLT TNHMTVVKSC ICMNVQDVAN KGSSLQSEIP ESAVKLLIQS
0501: IFNNTGGEVV VNKHGKTELL GTPTETAILE LGLSLGGKFQ EERKSYKVIK VEPFNSTKKR MGVVIELPEG GRMRAHTKGA SEIVLAACDK VVNSSGEVVP
0601: LDEESIKYLN VTINEFANEA LRTLCLAYMD IEGGFSPDDA IPASGFTCVG IVGIKDPVRP GVKESVELCR RAGITVRMVT GDNINTAKAI ARECGILTDD
0701: GIAIEGPVFR EKNQEELLEL IPKIQVMARS SPMDKHTLVK QLRTTFDEVV AVTGDGTNDA PALHEADIGL AMGIAGTEVA KESADVIILD DNFSTIVTVA
0801: KWGRSVYINI QKFVQFQLTV NVVALVVNFS SACLTGSAPL TAVQLLWVNM IMDTLGALAL ATEPPNDELM KRLPVGRRGN FITNAMWRNI LGQAVYQFIV
0901: IWILQAKGKA MFGLDGPDST LMLNTLIFNC FVFCQVFNEI SSREMEEIDV FKGILDNYVF VVVIGATVFF QIIIIEFLGT FASTTPLTIT QWIFSIFIGF
1001: LGMPIAAGLK TIPV

Arabidopsis Description

ACA2Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178V2M5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.