Factsheet for PGSC0003DMT400055192

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
endoplasmic reticulum 2
plastid 1
vacuole 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400018016
PGSC0003DMT400050482
PGSC0003DMT400069195

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37640.1	PGSC0003DMT400018016	AT4G03290.1	21798944
AT4G37640.1	PGSC0003DMT400069195	AT4G03290.1	21798944
AT4G37640.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT4G37640.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092450.2.1	Tomato	nucleus, unclear	98.43	98.43
PGSC0003DMT400033890	Potato	cytosol, peroxisome, plasma membrane	88.69	88.69
Bra017841.1-P	Field mustard	plasma membrane	82.1	82.35
CDY29571	Canola	plasma membrane	82.1	82.35
CDX72644	Canola	plasma membrane	81.91	82.15
AT4G37640.1	Thale cress	plasma membrane	81.81	82.05
KRH28359	Soybean	cytosol, peroxisome, plasma membrane	81.81	81.89
KRH77121	Soybean	cytosol, endoplasmic reticulum, peroxisome	81.51	81.76
VIT_07s0129g00180.t01	Wine grape	plasma membrane	81.81	81.65
KRH58090	Soybean	cytosol	81.32	81.56
CDY44033	Canola	plasma membrane	81.71	81.55
Bra039940.1-P	Field mustard	plasma membrane	81.22	81.46
CDY49443	Canola	plasma membrane	81.22	81.46
CDY22420	Canola	plasma membrane	81.32	81.4
AT2G22950.1	Thale cress	cytosol, peroxisome, plasma membrane	81.22	81.38
KRH04436	Soybean	cytosol, endoplasmic reticulum, plasma membrane	81.02	81.26
CDX76883	Canola	plasma membrane	80.83	81.07
Bra010605.1-P	Field mustard	plasma membrane	81.51	80.49
GSMUA_Achr4P32520_001	Banana	plasma membrane	65.29	80.29
VIT_07s0129g00110.t01	Wine grape	plasma membrane	41.69	79.25
GSMUA_Achr4P10940_001	Banana	cytosol	69.52	79.17
GSMUA_Achr6P16920_001	Banana	cytosol	59.29	78.31
PGSC0003DMT400055386	Potato	plasma membrane	77.97	78.05
Os12t0586600-01	Rice	plasma membrane	76.89	76.67
TraesCS5D01G080700.1	Wheat	plasma membrane	76.11	75.88
TraesCS5B01G075100.2	Wheat	plasma membrane	76.01	75.78
TraesCS5A01G068700.1	Wheat	plasma membrane	75.81	75.59
KXG23838	Sorghum	plasma membrane	75.81	75.59
Zm00001d030893_P004	Maize	plasma membrane	75.61	75.39
HORVU5Hr1G018160.3	Barley	cytosol	75.12	73.96
Os03t0616400-01	Rice	plastid	66.67	65.63
EER93815	Sorghum	plastid	66.67	65.63
TraesCS4D01G079200.1	Wheat	plasma membrane	67.36	65.24
HORVU4Hr1G013660.3	Barley	plasma membrane, plastid	67.26	65.14
TraesCS4B01G080300.1	Wheat	plastid	67.26	65.02
Zm00001d033334_P001	Maize	plastid	66.08	64.99
TraesCS4A01G234700.1	Wheat	plastid	66.77	64.54
PGSC0003DMT400021028	Potato	plasma membrane	55.95	60.53
PGSC0003DMT400033064	Potato	plasma membrane	61.95	60.23
PGSC0003DMT400062826	Potato	plasma membrane	18.49	53.87
PGSC0003DMT400096083	Potato	plasma membrane	16.13	52.73
PGSC0003DMT400097702	Potato	plasma membrane	17.01	48.46
GSMUA_Achr3P30070_001	Banana	cytosol, nucleus, plasma membrane	70.3	44.24
PGSC0003DMT400050008	Potato	plasma membrane	42.67	43.14
PGSC0003DMT400096782	Potato	plasma membrane	24.39	38.27
PGSC0003DMT400089589	Potato	plasma membrane	28.52	36.85
PGSC0003DMT400093936	Potato	plasma membrane	40.51	33.41
PGSC0003DMT400089336	Potato	plasma membrane	29.7	33.37
PGSC0003DMT400094259	Potato	plasma membrane	28.12	31.74
PGSC0003DMT400048740	Potato	plastid	30.58	30.25
PGSC0003DMT400040184	Potato	plasma membrane	28.61	27.43
PGSC0003DMT400000352	Potato	peroxisome	27.63	26.81

Protein Annotations

Gene3D:1.20.1110.10	Gene3D:2.70.150.10	MapMan:24.1.2.2.2	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_C	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	InterPro:Ca_ATPase_N_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005388	GO:GO:0005488
GO:GO:0005515	GO:GO:0005516	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0006816	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0070588
GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299	UniProt:M1BXI4
InterPro:P-type_ATPase_IIB	PFAM:PF00122	PFAM:PF00689	PFAM:PF00690	PFAM:PF12515	PFAM:PF13246
EnsemblPlantsGene:PGSC0003DMG400021421	PGSC:PGSC0003DMG400021421	EnsemblPlants:PGSC0003DMT400055192	PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154
PANTHER:PTHR24093	PANTHER:PTHR24093:SF262	InterPro:P_typ_ATPase	SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653
SUPFAM:SSF81660	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01517	TMHMM:TMhelix	UniParc:UPI0002951B01
SEG:seg	:	:	:	:	:

Description

Calcium-transporting ATPase 2, plasma membrane-type [Source:PGSC_GENE;Acc:PGSC0003DMG400021421]

Coordinates

chr2:+:42769524..42774411

Molecular Weight (calculated)

111200.0 Da

IEP (calculated)

6.081

GRAVY (calculated)

0.181

Length

1017 amino acids

Sequence
(BLAST)

0001: MESYLNENFG GVKAKHSEEE MLRRWRSLCG VVKNPKRRFR FTANLSKRYE AAAMRRTNHE KLRVAVLVSK AAFQFISGVQ VSDYTLPDEV KKAGFQIDAE
0101: ELGSIVEGHD LKKVKFHGGV DGIANKLETS STDGLSTRDY STLIRRQEIF GVNKFQESEA RSFWLFVWEA LQDMTLMILG ACAFVSLLVG IAMEGWPDGA
0201: HDGLGIVASI LLVVFVTATS DYRQSLQFRD LDKEKKKISI QVTRNGYRQK MSIYDLVPGD IVHLAIGDQV PADGLFLSGF SVLIDESSLT GESEPVTVTA
0301: QNPFLLSGTK VQDGSCKMLV TTVGMRTQWG KLLATLSEGG DDETPLQVKL NGVATIIGKI GLFFAVVTFA VLVQKMYSRK LTEGSHWSWS AGEARELLEY
0401: FAIAVTIVVV AVPEGLPLAV TLSLAFAMKK MMNDKALVRH LAACETMGSA TTICSDKTGT LTTNRMTVVK TCFCMNVKDV HKPSDASTLC SEIPDSVLKT
0501: LLQSIFNNTG GEVVATKHGK PDILGTPTET AILQFGLSLG GDFQAERQAG KLIKVEPFNS TRKRMGVVLE LPEGGLRAYT KGASEIVLAA CDKVINSSGE
0601: VVPLDETSTN HLKTTIDQFA NEALRTLCLA YMELDKGFSP AADIPVSGYT CIGIVGIKDP VRPGVRESVA LCRSAGVTVR MVTGDNINTA TAIARECGIL
0701: TDAGIAIEGP VFREKSQEEW LKLIPKIQVM ARSSPLDKHT LVKQLRTTFN EVVAVTGDGT NDAPALHEAD IGLAMGIAGT EVAKESADVI ILDDNFSTIV
0801: TVAKWGRSVY INIQKFVQFQ LTVNIVALVV NFLSACFTGT APLTAVQLLW VNMIMDTLGA LALATEPPHD ELMNRAPVGR TGNFISNVMW RNILGQSLYQ
0901: FVVIWLLQSV GMGLFRLSGP DATLTLNTII FNTFVFCQLF NEINSREMEK VDVWEGILDN YVFVTVISVT LVFQIIIIEY LGTFASTTPL SFWQWFVSVF
1001: FGFLSMPVAV ALKGFEV

Best Arabidopsis Sequence Match ( AT4G37640.1 )
(BLAST)

0001: MESYLNENFD VKAKHSSEEV LEKWRNLCGV VKNPKRRFRF TANLSKRYEA AAMRRTNQEK LRIAVLVSKA AFQFISGVSP SDYTVPEDVK AAGFEICADE
0101: LGSIVESHDV KKLKFHGGVD GLAGKLKASP TDGLSTEAAQ LSQRQELFGI NKFAESEMRG FWVFVWEALQ DMTLMILGVC AFVSLIVGIA TEGWPKGSHD
0201: GLGIAASILL VVFVTATSDY RQSLQFRDLD KEKKKITVQV TRNGFRQKLS IYDLLPGDIV HLAIGDQVPA DGLFLSGFSV VIDESSLTGE SEPVMVNAQN
0301: PFLMSGTKVQ DGSCKMMITT VGMRTQWGKL MATLTEGGDD ETPLQVKLNG VATIIGKIGL FFAVVTFAVL VQGMFMRKLS TGTHWVWSGD EALELLEYFA
0401: IAVTIVVVAV PEGLPLAVTL SLAFAMKKMM NDKALVRHLA ACETMGSATT ICSDKTGTLT TNHMTVVKSC ICMNVQDVAN KGSSLQSEIP ESAVKLLIQS
0501: IFNNTGGEVV VNKHGKTELL GTPTETAILE LGLSLGGKFQ EERKSYKVIK VEPFNSTKKR MGVVIELPEG GRMRAHTKGA SEIVLAACDK VVNSSGEVVP
0601: LDEESIKYLN VTINEFANEA LRTLCLAYMD IEGGFSPDDA IPASGFTCVG IVGIKDPVRP GVKESVELCR RAGITVRMVT GDNINTAKAI ARECGILTDD
0701: GIAIEGPVFR EKNQEELLEL IPKIQVMARS SPMDKHTLVK QLRTTFDEVV AVTGDGTNDA PALHEADIGL AMGIAGTEVA KESADVIILD DNFSTIVTVA
0801: KWGRSVYINI QKFVQFQLTV NVVALVVNFS SACLTGSAPL TAVQLLWVNM IMDTLGALAL ATEPPNDELM KRLPVGRRGN FITNAMWRNI LGQAVYQFIV
0901: IWILQAKGKA MFGLDGPDST LMLNTLIFNC FVFCQVFNEI SSREMEEIDV FKGILDNYVF VVVIGATVFF QIIIIEFLGT FASTTPLTIT QWIFSIFIGF
1001: LGMPIAAGLK TIPV

Arabidopsis Description

ACA2Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178V2M5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.