Factsheet for PGSC0003DMT400033890

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
endoplasmic reticulum 2
plastid 1
vacuole 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400018016
PGSC0003DMT400050482
PGSC0003DMT400069195

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37640.1	PGSC0003DMT400018016	AT4G03290.1	21798944
AT4G37640.1	PGSC0003DMT400069195	AT4G03290.1	21798944
AT4G37640.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT4G37640.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g064680.2.1	Tomato	nucleus, unclear	97.44	97.44
PGSC0003DMT400055192	Potato	plasma membrane	88.69	88.69
Bra017841.1-P	Field mustard	plasma membrane	82.2	82.45
CDX72644	Canola	plasma membrane	82.2	82.45
AT4G37640.1	Thale cress	plasma membrane	82.1	82.35
CDY29571	Canola	plasma membrane	82.1	82.35
KRH28359	Soybean	cytosol, peroxisome, plasma membrane	81.81	81.89
KRH77121	Soybean	cytosol, endoplasmic reticulum, peroxisome	81.61	81.85
CDY22420	Canola	plasma membrane	81.61	81.69
VIT_07s0129g00180.t01	Wine grape	plasma membrane	81.81	81.65
CDY44033	Canola	plasma membrane	81.71	81.55
KRH58090	Soybean	cytosol	80.92	81.16
Bra039940.1-P	Field mustard	plasma membrane	80.83	81.07
AT2G22950.1	Thale cress	cytosol, peroxisome, plasma membrane	80.83	80.99
CDY49443	Canola	plasma membrane	80.73	80.97
KRH04436	Soybean	cytosol, endoplasmic reticulum, plasma membrane	80.53	80.77
CDX76883	Canola	plasma membrane	80.33	80.57
Bra010605.1-P	Field mustard	plasma membrane	81.42	80.39
VIT_07s0129g00110.t01	Wine grape	plasma membrane	42.18	80.19
GSMUA_Achr4P32520_001	Banana	plasma membrane	64.8	79.69
GSMUA_Achr4P10940_001	Banana	cytosol	69.42	79.06
GSMUA_Achr6P16920_001	Banana	cytosol	59.78	78.96
PGSC0003DMT400055386	Potato	plasma membrane	77.68	77.76
Os12t0586600-01	Rice	plasma membrane	76.7	76.47
Zm00001d030893_P004	Maize	plasma membrane	75.52	75.29
TraesCS5D01G080700.1	Wheat	plasma membrane	75.42	75.2
KXG23838	Sorghum	plasma membrane	75.32	75.1
TraesCS5B01G075100.2	Wheat	plasma membrane	75.22	75.0
TraesCS5A01G068700.1	Wheat	plasma membrane	75.02	74.8
HORVU5Hr1G018160.3	Barley	cytosol	74.63	73.48
Os03t0616400-01	Rice	plastid	67.06	66.02
EER93815	Sorghum	plastid	66.47	65.44
HORVU4Hr1G013660.3	Barley	plasma membrane, plastid	67.36	65.24
TraesCS4D01G079200.1	Wheat	plasma membrane	67.36	65.24
TraesCS4B01G080300.1	Wheat	plastid	67.16	64.92
Zm00001d033334_P001	Maize	plastid	65.88	64.8
TraesCS4A01G234700.1	Wheat	plastid	66.86	64.64
PGSC0003DMT400021028	Potato	plasma membrane	55.36	59.89
PGSC0003DMT400033064	Potato	plasma membrane	61.26	59.56
PGSC0003DMT400062826	Potato	plasma membrane	18.58	54.15
PGSC0003DMT400096083	Potato	plasma membrane	16.13	52.73
PGSC0003DMT400097702	Potato	plasma membrane	17.11	48.74
GSMUA_Achr3P30070_001	Banana	cytosol, nucleus, plasma membrane	70.01	44.06
PGSC0003DMT400050008	Potato	plasma membrane	42.58	43.04
PGSC0003DMT400096782	Potato	plasma membrane	25.07	39.35
PGSC0003DMT400089589	Potato	plasma membrane	28.71	37.1
PGSC0003DMT400089336	Potato	plasma membrane	30.38	34.14
PGSC0003DMT400093936	Potato	plasma membrane	41.0	33.82
PGSC0003DMT400094259	Potato	plasma membrane	28.71	32.41
PGSC0003DMT400048740	Potato	plastid	30.97	30.64
PGSC0003DMT400040184	Potato	plasma membrane	28.22	27.05
PGSC0003DMT400000352	Potato	peroxisome	27.34	26.53

Protein Annotations

Gene3D:1.20.1110.10	EntrezGene:102589419	Gene3D:2.70.150.10	MapMan:24.1.2.2.2	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_C	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf
InterPro:Ca_ATPase_N_dom	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005388	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0006816	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0070588	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
InterPro:IPR023299	UniProt:M1AZW1	InterPro:P-type_ATPase_IIB	PFAM:PF00122	PFAM:PF00689	PFAM:PF00690
PFAM:PF12515	PFAM:PF13246	EnsemblPlantsGene:PGSC0003DMG400013022	PGSC:PGSC0003DMG400013022	EnsemblPlants:PGSC0003DMT400033890	PRINTS:PR00119
PRINTS:PR00120	ScanProsite:PS00154	PANTHER:PTHR24093	PANTHER:PTHR24093:SF262	InterPro:P_typ_ATPase	SUPFAM:SSF56784
SUPFAM:SSF81653	SUPFAM:SSF81660	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01517	TMHMM:TMhelix
UniParc:UPI0002951754	RefSeq:XP_006364415.1	SEG:seg	:	:	:

Description

Calcium-transporting ATPase 2, plasma membrane-type [Source:PGSC_GENE;Acc:PGSC0003DMG400013022]

Coordinates

chr2:+:22746239..22752186

Molecular Weight (calculated)

111242.0 Da

IEP (calculated)

5.682

GRAVY (calculated)

0.179

Length

1017 amino acids

Sequence
(BLAST)

0001: MESYLNENFG DVKPKHSSEE VLKRWRSLCG VVKNPKRRFR FTANLSKRYE AAAMRRTNHE KLRVAVLVSK AAFQFIQGMQ PSDYSVPKEV EDAGFQIDAD
0101: ELGSVVESHD LKKVKFHGGV DGIASKLATS STDGISTNNE TALIRRQELF GVNKFQESEA RSFWLFVWEA LQDMTLMILG ACAFVSLIVG IVMEGWPVGA
0201: HDGLGIVASI LLVVFVTATS DYRQSLQFRD LDKEKKKISI QVTRNGYRQK MSIYDLVPGD IVHLAIGDQV PADGLFLSGF SVLIDESSLT GESEPVMVNA
0301: QNPFLLSGTK VQDGSCKMLV TTVGMRTQWG KLIATLSEGG DDETPLQVKL NGVATIIGKI GLFFAVVTFA VLLQKMFGRK LLEGSHWSWS GEEAREVLEY
0401: FAIAVTIVVV AVPEGLPLAV TLSLAFAMKK MMNDKALVRN LAACETMGSA TTICSDKTGT LTTNRMTVVK TCFCMNVKDV SKPGDASALC SEMPNSVLKT
0501: LLQSIFNNTS GEVVVTKGKK REMLGTPTET AILEFGLALG GDFQAERQAG KLVKIEPFNS TKKLMGVVLE LPEGGLRAHT KGASEIILAA CDKVVNSNGD
0601: VVSMDETLRN NLNATIEQFA TEALRTLCLA YMDLENGFSP DDAIPLSGYT CIGIVGIKDP VRPGVKESVA LCRSAGVTVR MVTGDNINTA KAIARECGIL
0701: TDDGIAIEGP VFREMSQEEM LKVIPKIQVM ARSSPLDKHT LVKQLRTTFN EVVAVTGDGT NDAPALHEAD IGLAMGIAGT EVAKESADVI ILDDNFSTIV
0801: TVAKWGRSVY INIQKFVQFQ LTVNIVALVV NFASACVTGS APLTAVQLLW VNMIMDTLGA LALATEPPND ELMKRAPVGR KGNFISNVMW RNILGQSLYQ
0901: FLVIWFLQVY GKTIFRLDGP DANLTLNTII FNSFVFCQLF NEVNSREMEK IEVWEGLLDN YVFVTVIGVT LFFQIIIIEY LGTFANTTPL SFAQWFVSVF
1001: FGFLGMPIAV LLKKMQI

Best Arabidopsis Sequence Match ( AT4G37640.1 )
(BLAST)

0001: MESYLNENFD VKAKHSSEEV LEKWRNLCGV VKNPKRRFRF TANLSKRYEA AAMRRTNQEK LRIAVLVSKA AFQFISGVSP SDYTVPEDVK AAGFEICADE
0101: LGSIVESHDV KKLKFHGGVD GLAGKLKASP TDGLSTEAAQ LSQRQELFGI NKFAESEMRG FWVFVWEALQ DMTLMILGVC AFVSLIVGIA TEGWPKGSHD
0201: GLGIAASILL VVFVTATSDY RQSLQFRDLD KEKKKITVQV TRNGFRQKLS IYDLLPGDIV HLAIGDQVPA DGLFLSGFSV VIDESSLTGE SEPVMVNAQN
0301: PFLMSGTKVQ DGSCKMMITT VGMRTQWGKL MATLTEGGDD ETPLQVKLNG VATIIGKIGL FFAVVTFAVL VQGMFMRKLS TGTHWVWSGD EALELLEYFA
0401: IAVTIVVVAV PEGLPLAVTL SLAFAMKKMM NDKALVRHLA ACETMGSATT ICSDKTGTLT TNHMTVVKSC ICMNVQDVAN KGSSLQSEIP ESAVKLLIQS
0501: IFNNTGGEVV VNKHGKTELL GTPTETAILE LGLSLGGKFQ EERKSYKVIK VEPFNSTKKR MGVVIELPEG GRMRAHTKGA SEIVLAACDK VVNSSGEVVP
0601: LDEESIKYLN VTINEFANEA LRTLCLAYMD IEGGFSPDDA IPASGFTCVG IVGIKDPVRP GVKESVELCR RAGITVRMVT GDNINTAKAI ARECGILTDD
0701: GIAIEGPVFR EKNQEELLEL IPKIQVMARS SPMDKHTLVK QLRTTFDEVV AVTGDGTNDA PALHEADIGL AMGIAGTEVA KESADVIILD DNFSTIVTVA
0801: KWGRSVYINI QKFVQFQLTV NVVALVVNFS SACLTGSAPL TAVQLLWVNM IMDTLGALAL ATEPPNDELM KRLPVGRRGN FITNAMWRNI LGQAVYQFIV
0901: IWILQAKGKA MFGLDGPDST LMLNTLIFNC FVFCQVFNEI SSREMEEIDV FKGILDNYVF VVVIGATVFF QIIIIEFLGT FASTTPLTIT QWIFSIFIGF
1001: LGMPIAAGLK TIPV

Arabidopsis Description

ACA2Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178V2M5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.