CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

cytosol 2
endoplasmic reticulum 3
plastid 1
vacuole 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22653
KRH24625
KRH26664
KRH29625

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37640.1	KRH24625	AT4G03290.1	21798944
AT4G37640.1	KRH29625	AT4G03290.1	21798944
AT4G37640.1	KRH22653	AT5G22290.1	21798944
AT4G37640.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28359	Soybean	cytosol, peroxisome, plasma membrane	96.55	96.36
VIT_07s0129g00180.t01	Wine grape	plasma membrane	85.4	84.99
KRH58090	Soybean	cytosol	83.92	83.92
KRH04436	Soybean	cytosol, endoplasmic reticulum, plasma membrane	83.73	83.73
VIT_07s0129g00110.t01	Wine grape	plasma membrane	44.08	83.55
Bra017841.1-P	Field mustard	plasma membrane	82.45	82.45
CDY29571	Canola	plasma membrane	82.45	82.45
CDX72644	Canola	plasma membrane	82.25	82.25
CDY44033	Canola	plasma membrane	82.64	82.24
CDY22420	Canola	plasma membrane	82.15	81.99
GSMUA_Achr4P10940_001	Banana	cytosol	72.09	81.86
Solyc02g092450.2.1	Tomato	nucleus, unclear	81.95	81.71
PGSC0003DMT400033890	Potato	cytosol, peroxisome, plasma membrane	81.85	81.61
AT4G37640.1	Thale cress	plasma membrane	81.56	81.56
PGSC0003DMT400055192	Potato	plasma membrane	81.76	81.51
Solyc02g064680.2.1	Tomato	nucleus, unclear	81.76	81.51
AT2G22950.1	Thale cress	cytosol, peroxisome, plasma membrane	81.16	81.08
CDY49443	Canola	plasma membrane	80.87	80.87
Bra039940.1-P	Field mustard	plasma membrane	80.87	80.87
Bra010605.1-P	Field mustard	plasma membrane	82.05	80.78
CDX76883	Canola	plasma membrane	80.77	80.77
GSMUA_Achr4P32520_001	Banana	plasma membrane	65.78	80.65
GSMUA_Achr6P16920_001	Banana	cytosol	61.14	80.52
KRH61405	Soybean	endoplasmic reticulum	79.19	78.8
Os12t0586600-01	Rice	plasma membrane	78.99	78.53
Zm00001d030893_P004	Maize	plasma membrane	78.9	78.43
KXG23838	Sorghum	plasma membrane	78.6	78.14
KRH52089	Soybean	endoplasmic reticulum, mitochondrion	78.5	78.12
TraesCS5A01G068700.1	Wheat	plasma membrane	77.71	77.25
TraesCS5D01G080700.1	Wheat	plasma membrane	77.71	77.25
TraesCS5B01G075100.2	Wheat	plasma membrane	77.51	77.06
HORVU5Hr1G018160.3	Barley	cytosol	76.73	75.31
Os03t0616400-01	Rice	plastid	69.63	68.34
EER93815	Sorghum	plastid	68.74	67.47
HORVU4Hr1G013660.3	Barley	plasma membrane, plastid	69.43	67.05
TraesCS4D01G079200.1	Wheat	plasma membrane	69.13	66.76
TraesCS4A01G234700.1	Wheat	plastid	69.13	66.64
Zm00001d033334_P001	Maize	plastid	67.65	66.34
TraesCS4B01G080300.1	Wheat	plastid	68.74	66.25
KRH23922	Soybean	plasma membrane	55.62	66.2
KRG95209	Soybean	plasma membrane	64.4	63.09
KRH66886	Soybean	plasma membrane	63.81	62.39
KRH39871	Soybean	plasma membrane, plastid	63.81	62.15
KRH33214	Soybean	endoplasmic reticulum	63.41	62.13
KRH72028	Soybean	cytosol, nucleus, plasma membrane	63.02	61.74
KRH47020	Soybean	golgi, plasma membrane	36.19	49.8
KRH67272	Soybean	peroxisome, plasma membrane	42.01	46.51
GSMUA_Achr3P30070_001	Banana	cytosol, nucleus, plasma membrane	72.68	45.61
KRH02761	Soybean	cytosol, nucleus, peroxisome	48.13	45.27
KRH19116	Soybean	cytosol	47.63	44.97
KRH37353	Soybean	plasma membrane	47.83	44.7
KRH12351	Soybean	cytosol, nucleus, peroxisome	47.63	44.64
KRH44631	Soybean	nucleus	48.03	44.6
KRH09610	Soybean	plasma membrane	47.93	44.55
KRH41701	Soybean	mitochondrion	43.1	44.32
KRH23705	Soybean	nucleus, plastid	47.73	43.88
KRG93759	Soybean	plastid	44.38	43.73
KRH29171	Soybean	plasma membrane	40.83	43.53
KRG95593	Soybean	plasma membrane	43.98	41.72
KRH47024	Soybean	cytosol, nucleus, plasma membrane	11.54	33.14
KRG95874	Soybean	endoplasmic reticulum	28.21	26.98
KRH67591	Soybean	endoplasmic reticulum	28.11	26.89
KRH06423	Soybean	plasma membrane	27.91	26.77
KRH47857	Soybean	plasma membrane	27.81	26.28
KRH61432	Soybean	plasma membrane	25.94	26.27
KRH14123	Soybean	plasma membrane	24.85	24.49

Protein Annotations

Gene3D:1.20.1110.10	Gene3D:2.70.150.10	MapMan:24.1.2.2.2	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	EMBL:ACUP02000658
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_C	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf
InterPro:Ca_ATPase_N_dom	EnsemblPlantsGene:GLYMA_01G193600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005388	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006811
GO:GO:0006816	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0043231
GO:GO:0070588	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	UniProt:I1J9E1	InterPro:IPR023214
InterPro:IPR023299	EnsemblPlants:KRH77121	ProteinID:KRH77121	ProteinID:KRH77121.1	InterPro:P-type_ATPase_IIB	PFAM:PF00122
PFAM:PF00689	PFAM:PF00690	PFAM:PF00702	PFAM:PF12515	PRINTS:PR00119	PRINTS:PR00120
ScanProsite:PS00154	PANTHER:PTHR24093	PANTHER:PTHR24093:SF262	InterPro:P_typ_ATPase	SMART:SM00831	SUPFAM:SSF56784
SUPFAM:SSF81653	SUPFAM:SSF81660	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01517	TMHMM:TMhelix
UniParc:UPI00023BDCD6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:52814075..52819944

Molecular Weight (calculated)

110611.0 Da

IEP (calculated)

5.773

GRAVY (calculated)

0.173

Length

1014 amino acids

Sequence
(BLAST)

0001: MESYLNENFE VKSKNSPEEV LQRWRRLCGI VKNPRRRFRF TANLSKRGEA AAMRRTIQEK LRIAILVSKA ALQFIQSVQL SDYKLPEEVK DAGFQICGDE
0101: LGSIVEVHDV KKFRHHGGVD GIAEKLSTST TEGLNSDTEL LNRRQQIYGI NKFTESAATS FWVFVWEAFQ DMTLMILGVC AIVSLLVGIA TEGWPKGAHD
0201: GLGIVASILL VVFVTATSDY RQSLQFRDLD KEKKKISIQV TRNGYRQKMS IYELLPGDIV HLAIGDQVPA DGLFVSGFSV LIDESSLTGE SEPVMVNSEN
0301: PFLLSGTKVQ DGSCKMLVTS VGMRTQWGKL MATLSEGGDD ETPLQVKLNG VATIIGKIGL FFAVVTFAVL VQGLVSLKLQ QGSLRSWTGD DALELLEFFA
0401: VAVTIVVVAV PEGLPLAVTL SLAFAMKKMM NDKALVRHLA ACETMGSATT ICSDKTGTLT TNHMTVVKTC FCMNSKEVSN NNASSLCSEL PEPAVKLLLE
0501: SIFNNTGGEV VVNQNGKREI LGTPTEAAIL EFGLSLGGDF QGEKQACKLV KVEPFNSTKK KMSVVVELPG GGLRAHCKGA SEIILAACDK VLNSNGEVVP
0601: LDEESTSHLK ATINQFASEA LRTLCLAYVE LENGFSPEDP IPVSGYTCIG VIGIKDPVRP GVKESVAMCR SAGITVRMVT GDNINTAKAI ARECGILTDD
0701: GIAIEGPEFR EKSQEELLEL IPKIQVMARS SPLDKHTLVK HLRTTFGEVV AVTGDGTNDA PALHEADIGL AMGIAGTEVA KESADVIILD DNFSTIVTVA
0801: KWGRSVYINI QKFVQFQLTV NVVALIVNFT SACLTGTAPL TAVQLLWVNM IMDTLGALAL ATEPPNDDLM KRSPVGRKGN FISNVMWRNI LGQSLYQFMV
0901: IWFLQSRGKS IFLLEGPNSD LVLNTLIFNS FVFCQVFNEI NSREMEKINV FKGILDNYVF VGVISATVFF QIIIVEYLGT FANTTPLTLS QWFFCLLVGF
1001: MGMPIAARLK KIPV

Best Arabidopsis Sequence Match ( AT4G37640.1 )
(BLAST)

0001: MESYLNENFD VKAKHSSEEV LEKWRNLCGV VKNPKRRFRF TANLSKRYEA AAMRRTNQEK LRIAVLVSKA AFQFISGVSP SDYTVPEDVK AAGFEICADE
0101: LGSIVESHDV KKLKFHGGVD GLAGKLKASP TDGLSTEAAQ LSQRQELFGI NKFAESEMRG FWVFVWEALQ DMTLMILGVC AFVSLIVGIA TEGWPKGSHD
0201: GLGIAASILL VVFVTATSDY RQSLQFRDLD KEKKKITVQV TRNGFRQKLS IYDLLPGDIV HLAIGDQVPA DGLFLSGFSV VIDESSLTGE SEPVMVNAQN
0301: PFLMSGTKVQ DGSCKMMITT VGMRTQWGKL MATLTEGGDD ETPLQVKLNG VATIIGKIGL FFAVVTFAVL VQGMFMRKLS TGTHWVWSGD EALELLEYFA
0401: IAVTIVVVAV PEGLPLAVTL SLAFAMKKMM NDKALVRHLA ACETMGSATT ICSDKTGTLT TNHMTVVKSC ICMNVQDVAN KGSSLQSEIP ESAVKLLIQS
0501: IFNNTGGEVV VNKHGKTELL GTPTETAILE LGLSLGGKFQ EERKSYKVIK VEPFNSTKKR MGVVIELPEG GRMRAHTKGA SEIVLAACDK VVNSSGEVVP
0601: LDEESIKYLN VTINEFANEA LRTLCLAYMD IEGGFSPDDA IPASGFTCVG IVGIKDPVRP GVKESVELCR RAGITVRMVT GDNINTAKAI ARECGILTDD
0701: GIAIEGPVFR EKNQEELLEL IPKIQVMARS SPMDKHTLVK QLRTTFDEVV AVTGDGTNDA PALHEADIGL AMGIAGTEVA KESADVIILD DNFSTIVTVA
0801: KWGRSVYINI QKFVQFQLTV NVVALVVNFS SACLTGSAPL TAVQLLWVNM IMDTLGALAL ATEPPNDELM KRLPVGRRGN FITNAMWRNI LGQAVYQFIV
0901: IWILQAKGKA MFGLDGPDST LMLNTLIFNC FVFCQVFNEI SSREMEEIDV FKGILDNYVF VVVIGATVFF QIIIIEFLGT FASTTPLTIT QWIFSIFIGF
1001: LGMPIAAGLK TIPV

Arabidopsis Description

ACA2Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178V2M5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.