Factsheet for Solyc02g092450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

cytosol 2
endoplasmic reticulum 2
plastid 1
vacuole 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g050750.1.1
Solyc06g074170.2.1
Solyc11g044920.1.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37640.1	Solyc05g050750.1.1	AT4G03290.1	21798944
AT4G37640.1	Solyc11g044920.1.1	AT4G03290.1	21798944
AT4G37640.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT4G37640.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055192	Potato	plasma membrane	98.43	98.43
Solyc02g064680.2.1	Tomato	nucleus, unclear	88.1	88.1
Bra017841.1-P	Field mustard	plasma membrane	82.5	82.74
CDY29571	Canola	plasma membrane	82.5	82.74
CDX72644	Canola	plasma membrane	82.3	82.54
AT4G37640.1	Thale cress	plasma membrane	82.1	82.35
KRH28359	Soybean	cytosol, peroxisome, plasma membrane	82.01	82.09
KRH77121	Soybean	cytosol, endoplasmic reticulum, peroxisome	81.71	81.95
VIT_07s0129g00180.t01	Wine grape	plasma membrane	82.1	81.94
CDY44033	Canola	plasma membrane	82.1	81.94
CDY22420	Canola	plasma membrane	81.71	81.79
AT2G22950.1	Thale cress	cytosol, peroxisome, plasma membrane	81.51	81.67
Bra039940.1-P	Field mustard	plasma membrane	81.32	81.56
CDY49443	Canola	plasma membrane	81.32	81.56
KRH58090	Soybean	cytosol	81.02	81.26
CDX76883	Canola	plasma membrane	80.92	81.16
Bra010605.1-P	Field mustard	plasma membrane	81.91	80.87
KRH04436	Soybean	cytosol, endoplasmic reticulum, plasma membrane	80.53	80.77
GSMUA_Achr4P32520_001	Banana	plasma membrane	65.19	80.17
VIT_07s0129g00110.t01	Wine grape	plasma membrane	41.79	79.44
GSMUA_Achr4P10940_001	Banana	cytosol	69.52	79.17
GSMUA_Achr6P16920_001	Banana	cytosol	59.19	78.18
Solyc04g077870.2.1	Tomato	plasma membrane	77.58	77.66
Os12t0586600-01	Rice	plasma membrane	76.99	76.76
TraesCS5D01G080700.1	Wheat	plasma membrane	76.5	76.27
TraesCS5B01G075100.2	Wheat	plasma membrane	76.4	76.18
KXG23838	Sorghum	plasma membrane	76.2	75.98
TraesCS5A01G068700.1	Wheat	plasma membrane	76.2	75.98
Zm00001d030893_P004	Maize	plasma membrane	76.01	75.78
HORVU5Hr1G018160.3	Barley	cytosol	75.32	74.15
Os03t0616400-01	Rice	plastid	66.96	65.92
EER93815	Sorghum	plastid	66.96	65.92
TraesCS4D01G079200.1	Wheat	plasma membrane	67.94	65.81
HORVU4Hr1G013660.3	Barley	plasma membrane, plastid	67.85	65.71
TraesCS4B01G080300.1	Wheat	plastid	67.75	65.49
Zm00001d033334_P001	Maize	plastid	66.37	65.28
TraesCS4A01G234700.1	Wheat	plastid	67.36	65.11
Solyc04g016260.2.1	Tomato	unclear	61.26	59.73
Solyc10g079300.1.1	Tomato	plasma membrane	55.06	59.64
Solyc01g097400.1.1	Tomato	cytosol	15.54	57.45
Solyc07g008320.2.1	Tomato	nucleus	48.97	46.07
Solyc03g123890.2.1	Tomato	plasma membrane	46.41	45.08
GSMUA_Achr3P30070_001	Banana	cytosol, nucleus, plasma membrane	70.4	44.31
Solyc09g082890.1.1	Tomato	peroxisome, plasma membrane	12.78	33.85
Solyc09g082870.1.1	Tomato	plasma membrane	29.89	28.2
Solyc11g072880.1.1	Tomato	nucleus, plastid, unclear	28.22	27.05
Solyc07g022790.2.1	Tomato	plasma membrane	10.42	26.77
Solyc01g096190.2.1	Tomato	plasma membrane	27.34	26.53
Solyc07g065300.1.1	Tomato	plasma membrane	25.37	26.49
Solyc07g022780.2.1	Tomato	mitochondrion	9.05	25.14

Protein Annotations

Gene3D:1.20.1110.10	Gene3D:2.70.150.10	MapMan:24.1.2.2.2	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_C	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	InterPro:Ca_ATPase_N_dom
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005388
GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006811	GO:GO:0006816
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0043231	GO:GO:0070588
GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299	UniProt:K4BD41
InterPro:P-type_ATPase_IIB	PFAM:PF00122	PFAM:PF00689	PFAM:PF00690	PFAM:PF12515	PFAM:PF13246
PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154	PANTHER:PTHR24093	PANTHER:PTHR24093:SF262	InterPro:P_typ_ATPase
SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81660	SUPFAM:SSF81665	EnsemblPlantsGene:Solyc02g092450.2
EnsemblPlants:Solyc02g092450.2.1	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01517	TMHMM:TMhelix	UniParc:UPI0002767F56	SEG:seg

Description

Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:K4BD41]

Coordinates

chr2:+:53501045..53505504

Molecular Weight (calculated)

111201.0 Da

IEP (calculated)

6.264

GRAVY (calculated)

0.179

Length

1017 amino acids

Sequence
(BLAST)

0001: MESYLNENFG GVKAKHSEEE MLRRWRSLCG VVKNPKRRFR FTANLSKRYE AAAMRRTNHE KLRVAVLVSK AAFQFISGVQ VSDYTLPDEV KKAGFQIDAE
0101: ELGSIVEGHD LKKVKFHGGV DGIANKLATS STDGLSTRDY STLIHRQEIF GVNKFQESEA RSFWLFVWEA LQDMTLMILG ACAFVSLLVG IAMEGWPDGA
0201: HDGLGIVASI LLVVFVTATS DYRQSLQFRD LDKEKKKIAI QVTRNGYRQK MSIYDLVPGD IVHLAIGDQV PADGLFLSGF SVLIDESSLT GESEPVTVTA
0301: QNPFLLSGTK VQDGSCKMLV TTVGMRTQWG KLLATLSEGG DDETPLQVKL NGVATIIGKI GLFFAVVTFA VLVQKMYSRK LTEGSHWSWS GGEARELLEY
0401: FAIAVTIVVV AVPEGLPLAV TLSLAFAMKK MMNDKALVRH LAACETMGSA TTICSDKTGT LTTNRMTVVK TCFCMNVKDV QKPSDASSLC SEIPDSVLKT
0501: LLQSIFNNTG GEVVATKHGK PDILGTPTET AILQFGLSLG GDFQKERQAG KLIKVEPFNS TRKRMGVVLE LPEGGLRAHT KGASEIVLAA CDKVINSSGE
0601: VVPMDETSTN HLKTTIDQFA NEALRTLCLA YMELDKGFSP AADIPVSGYT CIGIVGIKDP VRPGVRESVA LCRSAGVTVR MVTGDNINTA TAIARECGIL
0701: TDAGIAIEGP VFREKSQEEW LKLIPKIQVM ARSSPLDKHT LVKQLRTTFN EVVAVTGDGT NDAPALHEAD IGLAMGIAGT EVAKESADVI ILDDNFSTIV
0801: TVAKWGRSVY INIQKFVQFQ LTVNIVALVV NFLSACFTGT APLTAVQLLW VNMIMDTLGA LALATEPPHD ELMNRAPVGR TGNFISNVMW RNILGQSLYQ
0901: FVVIWFLQSV GMGFFRLSGP DATLTLNTII FNTFVFCQLF NEINSREMEK VEVWEGMLDN YVFVVVISVT LVFQIIIIEY LGTFASTTPL TFWQWFVSVF
1001: FGFLGMPVAV ALKGFEV

Best Arabidopsis Sequence Match ( AT4G37640.1 )
(BLAST)

0001: MESYLNENFD VKAKHSSEEV LEKWRNLCGV VKNPKRRFRF TANLSKRYEA AAMRRTNQEK LRIAVLVSKA AFQFISGVSP SDYTVPEDVK AAGFEICADE
0101: LGSIVESHDV KKLKFHGGVD GLAGKLKASP TDGLSTEAAQ LSQRQELFGI NKFAESEMRG FWVFVWEALQ DMTLMILGVC AFVSLIVGIA TEGWPKGSHD
0201: GLGIAASILL VVFVTATSDY RQSLQFRDLD KEKKKITVQV TRNGFRQKLS IYDLLPGDIV HLAIGDQVPA DGLFLSGFSV VIDESSLTGE SEPVMVNAQN
0301: PFLMSGTKVQ DGSCKMMITT VGMRTQWGKL MATLTEGGDD ETPLQVKLNG VATIIGKIGL FFAVVTFAVL VQGMFMRKLS TGTHWVWSGD EALELLEYFA
0401: IAVTIVVVAV PEGLPLAVTL SLAFAMKKMM NDKALVRHLA ACETMGSATT ICSDKTGTLT TNHMTVVKSC ICMNVQDVAN KGSSLQSEIP ESAVKLLIQS
0501: IFNNTGGEVV VNKHGKTELL GTPTETAILE LGLSLGGKFQ EERKSYKVIK VEPFNSTKKR MGVVIELPEG GRMRAHTKGA SEIVLAACDK VVNSSGEVVP
0601: LDEESIKYLN VTINEFANEA LRTLCLAYMD IEGGFSPDDA IPASGFTCVG IVGIKDPVRP GVKESVELCR RAGITVRMVT GDNINTAKAI ARECGILTDD
0701: GIAIEGPVFR EKNQEELLEL IPKIQVMARS SPMDKHTLVK QLRTTFDEVV AVTGDGTNDA PALHEADIGL AMGIAGTEVA KESADVIILD DNFSTIVTVA
0801: KWGRSVYINI QKFVQFQLTV NVVALVVNFS SACLTGSAPL TAVQLLWVNM IMDTLGALAL ATEPPNDELM KRLPVGRRGN FITNAMWRNI LGQAVYQFIV
0901: IWILQAKGKA MFGLDGPDST LMLNTLIFNC FVFCQVFNEI SSREMEEIDV FKGILDNYVF VVVIGATVFF QIIIIEFLGT FASTTPLTIT QWIFSIFIGF
1001: LGMPIAAGLK TIPV

Arabidopsis Description

ACA2Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178V2M5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.