Factsheet for Solyc04g016260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 3
endoplasmic reticulum 2
plastid 1
vacuole 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033064	Potato	plasma membrane	96.55	96.27
Solyc10g079300.1.1	Tomato	plasma membrane	73.54	81.68
VIT_08s0007g08960.t01	Wine grape	plasma membrane	71.81	72.51
AT3G57330.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	69.99	71.22
CDY06114	Canola	plasma membrane	69.89	71.12
Bra007319.1-P	Field mustard	plasma membrane	69.51	71.01
CDX72049	Canola	plasma membrane	69.7	70.93
GSMUA_Achr9P17740_001	Banana	plasma membrane	55.03	70.78
KRH66886	Soybean	plasma membrane	70.18	70.59
KRG95209	Soybean	plasma membrane	69.99	70.53
Bra003276.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	69.22	70.44
CDX67686	Canola	cytosol, peroxisome, plasma membrane, plastid	69.03	70.24
CDY33829	Canola	plasma membrane	68.94	70.15
CDY14779	Canola	plasma membrane	66.73	70.09
AT2G41560.1	Thale cress	plasma membrane	69.13	70.0
CDY06915	Canola	plasma membrane	69.13	69.86
Bra016926.1-P	Field mustard	plasma membrane	68.94	69.67
GSMUA_Achr5P08080_001	Banana	plasma membrane	55.9	68.83
KRH33214	Soybean	endoplasmic reticulum	67.88	68.41
KRH72028	Soybean	cytosol, nucleus, plasma membrane	67.88	68.41
EES16530	Sorghum	plasma membrane	67.69	68.08
TraesCS5D01G142900.2	Wheat	plasma membrane	67.5	67.95
Os11t0140400-01	Rice	cytosol	58.49	67.93
TraesCS5B01G135200.1	Wheat	plasma membrane	67.4	67.86
TraesCS5A01G136200.1	Wheat	plasma membrane	67.31	67.76
HORVU5Hr1G043640.2	Barley	cytosol	67.21	67.66
Os12t0136900-00	Rice	plasma membrane	67.31	67.56
EES07943	Sorghum	plasma membrane	67.02	67.41
Zm00001d052457_P001	Maize	plasma membrane	63.76	67.1
Zm00001d023258_P002	Maize	plasma membrane	65.68	65.49
Zm00001d042164_P002	Maize	cytosol, nucleus, plasma membrane	64.24	64.11
OQU88174	Sorghum	cytosol, nucleus, plasma membrane	64.14	63.96
Os01t0939100-01	Rice	plasma membrane	63.85	63.85
Zm00001d011896_P001	Maize	cytosol, nucleus, plasma membrane	64.05	63.8
HORVU3Hr1G102890.1	Barley	plasma membrane	63.57	63.57
TraesCS3D01G470100.1	Wheat	plasma membrane	63.28	63.28
TraesCS3B01G519000.1	Wheat	plasma membrane	63.18	63.18
TraesCS3A01G475500.1	Wheat	plasma membrane	62.99	62.99
EES18436	Sorghum	plasma membrane	62.8	62.86
Zm00001d038576_P001	Maize	plasma membrane, plastid	62.61	62.73
Solyc04g077870.2.1	Tomato	plasma membrane	60.5	62.11
TraesCS1B01G324000.1	Wheat	plasma membrane	61.55	61.61
Solyc02g092450.2.1	Tomato	nucleus, unclear	59.73	61.26
TraesCS1D01G312500.1	Wheat	plasma membrane	61.17	61.23
TraesCS1A01G312300.1	Wheat	plasma membrane	61.07	61.13
Solyc02g064680.2.1	Tomato	nucleus, unclear	59.54	61.06
HORVU1Hr1G067550.14	Barley	nucleus	61.84	60.62
Os05t0495600-00	Rice	plasma membrane	59.64	58.85
Solyc01g097400.1.1	Tomato	cytosol	14.96	56.73
Solyc07g008320.2.1	Tomato	nucleus	48.03	46.35
Solyc03g123890.2.1	Tomato	plasma membrane	45.73	45.56
Solyc09g082890.1.1	Tomato	peroxisome, plasma membrane	13.14	35.68
Solyc09g082870.1.1	Tomato	plasma membrane	31.54	30.52
Solyc07g022790.2.1	Tomato	plasma membrane	10.26	27.02
Solyc11g072880.1.1	Tomato	nucleus, plastid, unclear	27.13	26.67
Solyc01g096190.2.1	Tomato	plasma membrane	26.56	26.43
Solyc07g065300.1.1	Tomato	plasma membrane	24.64	26.39
Solyc07g022780.2.1	Tomato	mitochondrion	8.44	24.04

Protein Annotations

Gene3D:1.20.1110.10	Gene3D:1.20.5.170	Gene3D:2.70.150.10	MapMan:24.1.2.2.2	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_C	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf
InterPro:Ca_ATPase_N_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005388
GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006811	GO:GO:0006816
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0043231	GO:GO:0070588
GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299	UniProt:K4BQC6
InterPro:P-type_ATPase_IIB	PFAM:PF00122	PFAM:PF00689	PFAM:PF00690	PFAM:PF00702	PFAM:PF12515
PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154	PANTHER:PTHR24093	PANTHER:PTHR24093:SF296	InterPro:P_typ_ATPase
SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81660	SUPFAM:SSF81665	EnsemblPlantsGene:Solyc04g016260.2
EnsemblPlants:Solyc04g016260.2.1	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01517	TMHMM:TMhelix	UniParc:UPI000276715B	SEG:seg

Description

Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:K4BQC6]

Coordinates

chr4:+:7057222..7066683

Molecular Weight (calculated)

113656.0 Da

IEP (calculated)

6.427

GRAVY (calculated)

0.155

Length

1043 amino acids

Sequence
(BLAST)

0001: MANILEPDEF DLPGKNPSVE AQRRWRDAVS FVRNRRRRFR YGSNLEKRKE AKELMEKTRE KIRVGFMAYM AALKFIDAGD HGRSSDQVNN VIGAELAKDL
0101: PEEAREAGFG INPDKLASIV GSYDIKTLKK LGGVEGLAGK LRVSSNEGVK SSDVSVRQNI YGSNKFTEKP FKSFWTFVWE ALHDLTLIIL IVCAVVSIGV
0201: GLATEGWPKG TYDGLGILLS IVLVVMVTAI SDYRQSLQFR DLDKEKKKIS IHVTRDGSRQ KVSIYDLVVG DVVHLSIGDL VPGDGIFISG YSLLIDQSSL
0301: SGESVPVSIS EKRPFLLSGT KVQDGSAKML VTTVGMRTEW GKLMETLSEG GEDETPLQVK LNGVATIIGK IGLGFAVVTF LVLIVRFLVN KATHHEITEW
0401: YSSDALTLLN YFATAVTIIV VAVPEGLPLA VTLSLAFAMK KLMDNKALVR HLSACETMGS ATCICTDKTG TLTTNHMVVD KIWICEKAKK VEIGGSADAI
0501: TDLSESAQDL LLQAIFHNTA AEVVKDKYGK KSVLGSPTES AILDYGLLLG DIDDKKKDCK LLKVEPFNSA KKRMSVLVSL PDSNTRAFCK GASEIVLKMC
0601: DRFIDCNGEI ADMSEEQATN ITNVINEFAS EALRTLCLAF KDVGDGYNIP DSGYTLVAVV GIKDPVRPGV KEAVKSCLAA GITVRMVTGD NIHTAKAIAK
0701: ECGILTDDGL AIEGPEFRNK SPDEMRQIIP RIQVMARSSP TDKHVLVKNL RGMFKEVVAV TGDGTNDAPA LHESDIGLAM GIAGTEVAKE SADIVVLDDN
0801: FSTIVNVAKW GRSVYINIQK FVQFQLTVNV VALMINFISA CASGSAPLTA VQLLWVNLIM DTLGALALAT EPPHDGLMSR PPVGRDVSFI TKTMWRNIIG
0901: HSIYQLAVLL AFNFAGKQIL GLEGSDSTMV LNTFIFNTFV FCQVFNEINS RDMEKINIFR GIFGSWIFIG VMVATVVFQV IIVEFLGTFA STTPLSWQLW
1001: LLSVSIGAVS LIVAVILKLI PVEKETPKHH DGYDLLPGGP ELA

Best Arabidopsis Sequence Match ( AT3G57330.1 )
(BLAST)

0001: MSNLLKDFEV ASKNPSLEAR QRWRSSVGLV KNRARRFRMI SNLDKLAENE KKRCQIQEKI RVVFYVQKAA FQFIDAGARP EYKLTDEVKK AGFYVEADEL
0101: ASMVRNHDTK SLTKIGGPEG IAQKVSVSLA EGVRSSELHI REKIYGENRY TEKPARSFLT FVWEALQDIT LIILMVCAVV SIGVGVATEG FPKGMYDGTG
0201: ILLSIILVVM VTAISDYKQS LQFRDLDREK KKIIIQVTRD GSRQEVSIHD LVVGDVVHLS IGDQVPADGI FISGYNLEID ESSLSGESEP SHVNKEKPFL
0301: LSGTKVQNGS AKMLVTTVGM RTEWGKLMDT LSEGGEDETP LQVKLNGVAT IIGKIGLGFA VLTFVVLCIR FVVEKATAGS ITEWSSEDAL TLLDYFAIAV
0401: TIIVVAVPEG LPLAVTLSLA FAMKQLMSDR ALVRHLAACE TMGSSTCICT DKTGTLTTNH MVVNKVWICE NIKERQEENF QLNLSEQVKN ILIQAIFQNT
0501: GSEVVKDKEG KTQILGSPTE RAILEFGLLL GGDVDTQRRE HKILKIEPFN SDKKKMSVLT SHSGGKVRAF CKGASEIVLK MCEKVVDSNG ESVPLSEEKI
0601: ASISDVIEGF ASEALRTLCL VYTDLDEAPR GDLPNGGYTL VAVVGIKDPV RPGVREAVQT CQAAGITVRM VTGDNISTAK AIAKECGILT AGGVAIEGSD
0701: FRNLPPHEMR AILPKIQVMA RSLPLDKHTL VNNLRKMGEV VAVTGDGTND APALHEADIG LAMGIAGTEV AKENADVIIM DDNFATIVNV AKWGRAVYIN
0801: IQKFVQFQLT VNVVALIINF VSACITGSAP LTAVQLLWVN MIMDTLGALA LATEPPNEGL MKRQPIGRTA SFITRAMWRN IIGQSIYQLI VLGILNFAGK
0901: QILNLNGPDS TIVLNTIIFN SFVFCQVFNE VNSREIEKIN VFEGMFKSWV FVAVMTATVG FQVIIVEFLG AFASTVPLSW QHWLLCILIG SVSMILAVGL
1001: KCIPVESNRH HDGYELLPSG PSDSA

Arabidopsis Description

ACA11Putative calcium-transporting ATPase 11, plasma membrane-type [Source:UniProtKB/Swiss-Prot;Acc:Q9M2L4]
SUBAcon: [peroxisome,plastid,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.