CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
endoplasmic reticulum 2
nucleus 2
plastid 1
vacuole 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72028	Soybean	cytosol, nucleus, plasma membrane	95.07	95.07
KRG95209	Soybean	plasma membrane	77.1	77.1
KRH66886	Soybean	plasma membrane	77.1	76.95
VIT_08s0007g08960.t01	Wine grape	plasma membrane	73.33	73.48
CDY14779	Canola	plasma membrane	68.21	71.1
AT3G57330.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	69.86	70.54
AT2G41560.1	Thale cress	plasma membrane	70.14	70.49
Bra016926.1-P	Field mustard	plasma membrane	70.14	70.35
CDY06915	Canola	plasma membrane	69.95	70.16
KRH23922	Soybean	plasma membrane	57.58	69.95
CDX72049	Canola	plasma membrane	69.18	69.85
CDY33829	Canola	plasma membrane	69.18	69.85
Bra003276.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	69.18	69.85
CDX67686	Canola	cytosol, peroxisome, plasma membrane, plastid	69.08	69.76
CDY06114	Canola	plasma membrane	68.99	69.66
Bra007319.1-P	Field mustard	plasma membrane	68.5	69.44
PGSC0003DMT400021028	Potato	plasma membrane	62.42	68.72
Solyc10g079300.1.1	Tomato	plasma membrane	61.84	68.16
GSMUA_Achr9P17740_001	Banana	plasma membrane	53.33	68.06
Solyc04g016260.2.1	Tomato	unclear	68.41	67.88
PGSC0003DMT400033064	Potato	plasma membrane	68.41	67.69
GSMUA_Achr5P08080_001	Banana	plasma membrane	54.88	67.06
KRH39871	Soybean	plasma membrane, plastid	67.44	67.05
EES16530	Sorghum	plasma membrane	66.96	66.83
HORVU5Hr1G043640.2	Barley	cytosol	66.67	66.6
TraesCS5D01G142900.2	Wheat	plasma membrane	66.67	66.6
TraesCS5A01G136200.1	Wheat	plasma membrane	66.47	66.41
TraesCS5B01G135200.1	Wheat	plasma membrane	66.47	66.41
EES07943	Sorghum	plasma membrane	66.28	66.15
Os12t0136900-00	Rice	plasma membrane	66.28	66.03
Os11t0140400-01	Rice	cytosol	57.0	65.7
Zm00001d052457_P001	Maize	plasma membrane	62.42	65.19
Zm00001d023258_P002	Maize	plasma membrane	64.93	64.24
Os01t0939100-01	Rice	plasma membrane	64.15	63.66
KRH28359	Soybean	cytosol, peroxisome, plasma membrane	62.32	63.48
KRH77121	Soybean	cytosol, endoplasmic reticulum, peroxisome	62.13	63.41
KRH61405	Soybean	endoplasmic reticulum	62.13	63.1
OQU88174	Sorghum	cytosol, nucleus, plasma membrane	63.77	63.1
EES18436	Sorghum	plasma membrane	63.48	63.05
TraesCS1A01G312300.1	Wheat	plasma membrane	63.48	63.05
KRH52089	Soybean	endoplasmic reticulum, mitochondrion	62.03	63.0
TraesCS1D01G312500.1	Wheat	plasma membrane	63.38	62.96
TraesCS1B01G324000.1	Wheat	plasma membrane	63.28	62.86
Zm00001d011896_P001	Maize	cytosol, nucleus, plasma membrane	63.57	62.85
Zm00001d042164_P002	Maize	cytosol, nucleus, plasma membrane	63.38	62.78
HORVU3Hr1G102890.1	Barley	plasma membrane	63.09	62.61
KRH58090	Soybean	cytosol	61.06	62.33
TraesCS3D01G470100.1	Wheat	plasma membrane	62.61	62.13
TraesCS3A01G475500.1	Wheat	plasma membrane	62.61	62.13
KRH04436	Soybean	cytosol, endoplasmic reticulum, plasma membrane	60.77	62.03
HORVU1Hr1G067550.14	Barley	nucleus	63.67	61.94
TraesCS3B01G519000.1	Wheat	plasma membrane	62.32	61.84
Zm00001d038576_P001	Maize	plasma membrane, plastid	62.13	61.77
Os05t0495600-00	Rice	plasma membrane	61.55	60.26
KRH47020	Soybean	golgi, plasma membrane	35.27	49.53
KRH12351	Soybean	cytosol, nucleus, peroxisome	48.12	46.03
KRH37353	Soybean	plasma membrane	48.21	45.99
KRH67272	Soybean	peroxisome, plasma membrane	40.68	45.96
KRH09610	Soybean	plasma membrane	47.54	45.1
KRH02761	Soybean	cytosol, nucleus, peroxisome	46.67	44.81
KRH44631	Soybean	nucleus	47.25	44.78
KRH19116	Soybean	cytosol	46.38	44.69
KRH23705	Soybean	nucleus, plastid	47.34	44.42
KRH29171	Soybean	plasma membrane	40.19	43.74
KRH41701	Soybean	mitochondrion	41.64	43.71
KRG93759	Soybean	plastid	42.71	42.95
KRG95593	Soybean	plasma membrane	42.71	41.35
KRH47024	Soybean	cytosol, nucleus, plasma membrane	11.98	35.13
KRH67591	Soybean	endoplasmic reticulum	28.79	28.11
KRG95874	Soybean	endoplasmic reticulum	28.7	28.02
KRH61432	Soybean	plasma membrane	26.28	27.17
KRH47857	Soybean	plasma membrane	27.83	26.84
KRH06423	Soybean	plasma membrane	27.25	26.68
KRH14123	Soybean	plasma membrane	24.64	24.78

Protein Annotations

Gene3D:1.20.1110.10	Gene3D:1.20.5.170	EntrezGene:100785768	Gene3D:2.70.150.10	MapMan:24.1.2.2.2	Gene3D:3.40.1110.10
Gene3D:3.40.50.1000	EMBL:ACUP02006419	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_C	InterPro:ATPase_P-typ_cation-transptr_N
InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	InterPro:Ca_ATPase_N_dom	EnsemblPlantsGene:GLYMA_10G107700	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005388	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887
GO:GO:0006810	GO:GO:0006811	GO:GO:0006816	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0043231	GO:GO:0070588	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf
UniProt:I1LA34	InterPro:IPR023214	InterPro:IPR023299	EnsemblPlants:KRH33214	ProteinID:KRH33214	ProteinID:KRH33214.1
InterPro:P-type_ATPase_IIB	PFAM:PF00122	PFAM:PF00689	PFAM:PF00690	PFAM:PF12515	PFAM:PF13246
PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154	PANTHER:PTHR24093	PANTHER:PTHR24093:SF296	InterPro:P_typ_ATPase
SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81660	SUPFAM:SSF81665	TIGRFAMs:TIGR01494
TIGRFAMs:TIGR01517	TMHMM:TMhelix	UniParc:UPI000233D7DA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:24457811..24469181

Molecular Weight (calculated)

113971.0 Da

IEP (calculated)

6.286

GRAVY (calculated)

0.149

Length

1035 amino acids

Sequence
(BLAST)

0001: MESFLNPEEF KLSHRDRSIE TLEKWRSAAW LVKNPRRRFR WAADLVKRKH AEDKRRKIQS TIRTALTVRR AADQFISVLP PAEYKVSEKT REAGFSIEPD
0101: DIASVVRGHD YNYYKKIGQV EGIIEKLSAS ADDGVGQDSI DTRQDIYGVN RYTEKPSKSF LMFVWEALHD LTLMILMVCA IVSIAIGLPT EGWPKGVYDG
0201: LGIILSIFLV VIVTAISDYQ QSLQFRDLDK EKKKIFVQVT RDRKRQKVSI YDLVVGDIVH LSTGDQVPAD GIYISGYSLV IDESSLTGES EPVNIDEERP
0301: FLLSGTKVQD GQGKMIVTTV GMRTEWGKLM ETLSEGGEDE TPLQVKLNGV ATVIGKIGLT FSVLTFVVLT IRFVVEKAVR GEFASWSSND ALKLLDYFAI
0401: AVTIIVVAIP EGLPLAVTLS LAFAMKKLMK DKALVRHLSA CETMGSATCI CTDKTGTLTT NHMVVNKIWI CGKINEIKGN ESIDKLKTEI SEEVLSILLR
0501: SIFQNTSSEV VKDKDGKTTI LGTPTESALL EFGLLAGGDF EAQRGTYKIL KVVPFNSVRK KMSVLVGLPD GGVQAFCKGA SEIVLKLCNK VIDPNGTAVD
0601: LSDEQAKKVS DIINGFANEA LRTLCLALKD VNGTQGESSI PEDSYTLIAI VGIKDPVRPG VREAVKTCLA AGITVRMVTG DNINTARAIA RECGILTEDG
0701: VAIEGPHFRD LSTEQMKSII PRIQVMARSL PLDKHTLVTR LRNMFGEVVA VTGDGTNDAP ALHESDIGLA MGIAGTEVAK ENADVIIMDD NFTTIVNVAR
0801: WGRAIYINIQ KFVQFQLTVN IVALIINFVS ACITGSAPLT AVQLLWVNLI MDTLGALALA TEPPNDGLML RPPVGRTTNF ITKPMWRNIF GQSLYQLIVL
0901: AVLTFDGKRL LRINGPDATI VLNTLIFNSF VFCQVFNEIN SREIEKINIF KGMFESWIFF TVIFSTVVFQ VLIVEFLGTF ASTVPLSWQF WVLSVVIGAF
1001: SMPISVILKC IPVERGGITT HHDGYEALPS GPELA

Best Arabidopsis Sequence Match ( AT2G41560.2 )
(BLAST)

001: MVRKNDTKSL AQKGGVEELA KKVSVSLSEG IRSSEVPIRE KIFGENRYTE KPARSFLMFV WEALHDITLI ILMVCAVVSI GVGVATEGFP RGMYDGTGIL
101: LSILLVVMVT AISDYKQSLQ FRDLDREKKK IIVQVTRDGS RQEISIHDLV VGDVVHLSIG DQVPADGIFI SGYNLEIDES SLSGESEPSH VNKEKPFLLS
201: GTKVQNGSAK MLVTTVGMRT EWGKLMETLV DGGEDETPLQ VKLNGVATII GKIGLSFAVL TFVVLCIRFV LDKATSGSFT NWSSEDALTL LDYFAISVTI
301: IVVAVPEGLP LAVTLSLAFA MKKLMSDRAL VRHLAACETM GSSTCICTDK TGTLTTNHMV VNKVWICDKV QERQEGSKES FELELSEEVQ STLLQGIFQN
401: TGSEVVKDKD GNTQILGSPT ERAILEFGLL LGGDFNTQRK EHKILKIEPF NSDKKKMSVL IALPGGGARA FCKGASEIVL KMCENVVDSN GESVPLTEER
501: ITSISDIIEG FASEALRTLC LVYKDLDEAP SGELPDGGYT MVAVVGIKDP VRPGVREAVQ TCQAAGITVR MVTGDNISTA KAIAKECGIY TEGGLAIEGS
601: EFRDLSPHEM RAIIPKIQVM ARSLPLDKHT LVSNLRKIGE VVAVTGDGTN DAPALHEADI GLAMGIAGTE VAKENADVII MDDNFKTIVN VARWGRAVYI
701: NIQKFVQFQL TVNVVALIIN FVSACITGSA PLTAVQLLWV NMIMDTLGAL ALATEPPNEG LMKRAPIART ASFITKTMWR NIAGQSVYQL IVLGILNFAG
801: KSLLKLDGPD STAVLNTVIF NSFVFCQVFN EINSREIEKI NVFKGMFNSW VFTWVMTVTV VFQVIIVEFL GAFASTVPLS WQHWLLSILI GSLNMIVAVI
901: LKCVPVESRH HHDGYDLLPS GPSSSNSA

Arabidopsis Description

ACA4Calcium-transporting ATPase 4, plasma membrane-type [Source:UniProtKB/Swiss-Prot;Acc:O22218]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.