Factsheet for TraesCS4A01G103000.2

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G201500.2	Wheat	golgi	99.53	99.53
TraesCS4D01G202200.2	Wheat	plasma membrane	99.34	99.34
HORVU4Hr1G058210.4	Barley	plastid	95.48	93.63
EER92445	Sorghum	plasma membrane	92.66	92.74
Os03t0281600-01	Rice	plasma membrane	73.73	92.66
Zm00001d047769_P001	Maize	plasma membrane	91.81	91.81
Zm00001d028687_P001	Maize	extracellular, mitochondrion	91.62	91.71
CDY06279	Canola	plasma membrane	29.19	82.67
CDX95122	Canola	cytosol, plasma membrane, vacuole	22.88	79.41
GSMUA_Achr2P16100_001	Banana	plasma membrane	67.23	78.46
TraesCS1A01G047000.1	Wheat	plasma membrane	78.06	78.43
VIT_06s0004g03900.t01	Wine grape	plasma membrane	77.02	77.1
VIT_08s0040g02830.t01	Wine grape	plasma membrane	76.65	76.58
KRG95874	Soybean	endoplasmic reticulum	75.99	76.13
CDY06268	Canola	plasma membrane	73.07	76.08
CDY09907	Canola	plasma membrane	72.88	76.03
AT1G07810.1	Thale cress	plasma membrane	75.61	75.68
AT1G07670.2	Thale cress	plasma membrane	75.61	75.68
KRH67591	Soybean	endoplasmic reticulum	75.52	75.66
Bra031593.1-P	Field mustard	plasma membrane	75.14	75.28
Bra031583.1-P	Field mustard	plasma membrane	68.27	75.21
PGSC0003DMT400040184	Potato	plasma membrane	74.58	74.65
Solyc11g072880.1.1	Tomato	nucleus, plastid, unclear	74.58	74.65
CDY22720	Canola	peroxisome, plasma membrane	69.02	72.79
CDY28053	Canola	plasma membrane	73.92	72.15
CDY35928	Canola	plasma membrane	69.96	71.31
CDY68458	Canola	cytosol, peroxisome, plasma membrane	42.0	66.97
Bra029645.1-P	Field mustard	plasma membrane, plastid	74.86	66.58
CDY61305	Canola	cytosol	28.34	61.81
TraesCS4A01G253500.1	Wheat	peroxisome	44.07	46.8
TraesCS1A01G332800.1	Wheat	plastid	27.21	28.22
TraesCS4A01G046800.3	Wheat	plasma membrane	26.84	27.94
TraesCS5A01G068700.1	Wheat	plasma membrane	26.37	27.45
TraesCS7A01G254400.1	Wheat	plasma membrane	27.87	27.33
TraesCS5A01G276700.4	Wheat	plasma membrane	28.25	27.3
TraesCS2A01G432700.1	Wheat	plastid, unclear	27.78	27.29
TraesCS5A01G136200.1	Wheat	plasma membrane	26.46	27.12
TraesCS3A01G475500.1	Wheat	plasma membrane	25.89	26.37
TraesCS4A01G234700.1	Wheat	plastid	26.08	26.33
TraesCS6A01G152700.2	Wheat	cytosol	26.84	26.05
TraesCS1A01G312300.1	Wheat	plasma membrane	25.42	25.91
TraesCS1A01G161100.1	Wheat	mitochondrion	14.31	20.51

Protein Annotations

Gene3D:1.20.1110.10	Gene3D:2.70.150.10	MapMan:24.1.2.2.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_C	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299	PFAM:PF00122	PFAM:PF00689
PFAM:PF00690	PFAM:PF00702	PFAM:PF13246	PRINTS:PR00119	ScanProsite:PS00154	PANTHER:PTHR42861
PANTHER:PTHR42861:SF3	InterPro:P_typ_ATPase	SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81660
SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4A01G103000	EnsemblPlants:TraesCS4A01G103000.2	SEG:seg

Description

No Description!

Coordinates

chr4A:-:115789914..115795348

Molecular Weight (calculated)

115776.0 Da

IEP (calculated)

5.060

GRAVY (calculated)

0.086

Length

1062 amino acids

Sequence
(BLAST)

0001: MGKGGQDEAA RPDGSGSPGA DPDVPVFPFW ARTPSDCLAE LGVSADRGLS SDDAAARLHK YGPNELERHA PPSLWKLVLE QFNDTLVRIL LAAAVVSFVL
0101: ALYDGAEGGE VRATAFVEPL VIFLILIVNA VVGVWQESNA EKALEALKEI QSEHATVKRD GRWKHGLPAR DLVIGDIVEL RVGDKVPADM RVLQLISSTL
0201: RVEQGSLTGE TSSVNKTSHK IHLEDTDIQG KECMVFAGTT IVNGSAVCVV TGTGMATEIG KIHSQIQEAS QEEDDTPLKK KLNEFGEALT AIIGVICILV
0301: WLINVKYFLT WEYVDGWPAN FKFSFEKCTY YFEIAVALAV AAIPEGLPAV ITTCLALGTR KMAQKNALVR KLPSVETLGC TTVICSDKTG TLTTNQMSAV
0401: RLVAIGRWPD TLRNFKVDGT TYDPSDGKIH DWPTLNMDDN LQMIAKIAAL CNDASIAHSE HQYVATGMPT EAALKVLVEK MGLPGGYTPS LDSSDLLRCC
0501: QWWNNDAKRV GTLEFDRTRK SMGVIVKKAE TGKNLLLVKG AVENLLERSA YIQLLDGSVV LLDEGAKALV LSTLREMSGS ALRCLGFAYK EDLADFATYD
0601: GEEHPAHKYL LDPAYYSSIE SSLIFCGFVG LRDPPREEVH KAIEDCRAAG IRVMVITGDN KETAEAICRE IGVFGPSENI SSKSFAGKEF MALPDRKKIL
0701: RQTGGLLFSR AEPKHKQEIV RLLKEDGEVV AMTGDGVNDA PALKLADIGI AMGITGTEVA KEASDMVLAD DNFSTIVSAV GEGRSIYNNM KAFIRYMISS
0801: NIGEVASIFL TSALGIPEGL IPVQLLWVNL VTDGPPATAL GFNPPDKDIM KKPPRRSDDS LITPWILFRY MVIGLYVGIA TVGIFIIWYT HGSFLGIDLA
0901: SDGHTLVSYS QLSNWGQCPS WEGFNVSSFT AGARTFNFDE NPCDYFQGGK IKATTLSLSV LVSIEMFNSL NALSEDGSLL SMPPWVNPWL LLAMSVSFGL
1001: HFLILYVPFL TQIFGIVPLS FNEWLLVVAV AFPVVLIDEV LKFVGRCLTA RARKQLGKRK EE

Best Arabidopsis Sequence Match ( AT1G07670.1 )
(BLAST)

0001: MGKGGEDCGN KQTNSSELVK SDTFPAWGKD VSECEEKFGV SREKGLSTDE VLKRHQIYGL NELEKPEGTS IFKLILEQFN DTLVRILLAA AVISFVLAFF
0101: DGDEGGEMGI TAFVEPLVIF LILIVNAIVG IWQETNAEKA LEALKEIQSQ QATVMRDGTK VSSLPAKELV PGDIVELRVG DKVPADMRVV ALISSTLRVE
0201: QGSLTGESEA VSKTTKHVDE NADIQGKKCM VFAGTTVVNG NCICLVTDTG MNTEIGRVHS QIQEAAQHEE DTPLKKKLNE FGEVLTMIIG LICALVWLIN
0301: VKYFLSWEYV DGWPRNFKFS FEKCTYYFEI AVALAVAAIP EGLPAVITTC LALGTRKMAQ KNALVRKLPS VETLGCTTVI CSDKTGTLTT NQMAVSKLVA
0401: MGSRIGTLRS FNVEGTSFDP RDGKIEDWPT GRMDANLQMI AKIAAICNDA NVEKSDQQFV SRGMPTEAAL KVLVEKMGFP EGLNEASSDG NVLRCCRLWS
0501: ELEQRIATLE FDRDRKSMGV MVDSSSGKKL LLVKGAVENV LERSTHIQLL DGSTRELDQY SRDLILQSLH DMSLSALRCL GFAYSDVPSD FATYDGSEDH
0601: PAHQQLLNPS NYSSIESNLV FVGFVGLRDP PRKEVRQAIA DCRTAGIRVM VITGDNKSTA EAICREIGVF EADEDISSRS LTGKEFMDVK DQKNHLRQTG
0701: GLLFSRAEPK HKQEIVRLLK EDGEVVAMTG DGVNDAPALK LADIGVAMGI SGTEVAKEAS DLVLADDNFS TIVAAVGEGR SIYNNMKAFI RYMISSNIGE
0801: VASIFLTAAL GIPEGMIPVQ LLWVNLVTDG PPATALGFNP PDKDIMKKPP RRSDDSLITA WILFRYMVIG LYVGVATVGV FIIWYTHNSF MGIDLSQDGH
0901: SLVSYSQLAH WGQCSSWEGF KVSPFTAGSQ TFSFDSNPCD YFQQGKIKAS TLSLSVLVAI EMFNSLNALS EDGSLVTMPP WVNPWLLLAM AVSFGLHFVI
1001: LYVPFLAQVF GIVPLSLNEW LLVLAVSLPV ILIDEVLKFV GRCTSGYRYS PRTPSAKQKE E

Arabidopsis Description

ECA4Calcium-transporting ATPase 4, endoplasmic reticulum-type [Source:UniProtKB/Swiss-Prot;Acc:Q9XES1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.