Factsheet for Solyc08g066110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065464	Potato	cytosol	95.42	95.42
Solyc11g070130.1.1	Tomato	extracellular	89.31	89.31
KRH60197	Soybean	cytosol	85.5	85.5
KRH41477	Soybean	nucleus	84.73	84.73
KRH41478	Soybean	cytosol	83.21	83.21
GSMUA_Achr2P19390_001	Banana	cytosol	79.39	79.39
GSMUA_Achr3P17580_001	Banana	cytosol	77.86	77.86
GSMUA_Achr8P20180_001	Banana	cytosol	77.86	77.86
GSMUA_Achr7P13660_001	Banana	cytosol	76.34	76.34
TraesCS3D01G110000.1	Wheat	cytosol	75.57	75.57
TraesCS3A01G108200.1	Wheat	cytosol	75.57	75.57
GSMUA_Achr5P06510_001	Banana	cytosol	75.57	75.57
HORVU3Hr1G019670.1	Barley	cytosol	74.81	74.81
GSMUA_Achr6P14890_001	Banana	cytosol	74.81	74.81
TraesCS3B01G127200.1	Wheat	cytosol	74.81	74.81
Solyc12g044630.1.1	Tomato	cytosol	75.57	74.44
Solyc06g066410.2.1	Tomato	cytosol, unclear	74.05	74.05
GSMUA_Achr10P...	Banana	cytosol	74.05	74.05
Solyc12g008590.1.1	Tomato	cytosol	51.91	69.39
Solyc11g071210.1.1	Tomato	cytosol	15.27	62.5
Os01t0191150-00	Rice	endoplasmic reticulum, extracellular	23.66	53.45
KXG31648	Sorghum	plastid	53.44	37.84

Protein Annotations

MapMan:20.2.2.3	Gene3D:3.30.450.30	EMBL:AJ417553	GO:GO:0003674	GO:GO:0003779	GO:GO:0003785
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005938	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0042989	PFAM:PF00235	InterPro:PFN	InterPro:PFN_sf	PRINTS:PR00392	PRINTS:PR01640
ScanProsite:PS00414	PANTHER:PTHR11604	PANTHER:PTHR11604:SF7	InterPro:Profilin_CS	UniProt:Q93YG7	SMART:SM00392
SUPFAM:SSF55770	EnsemblPlantsGene:Solyc08g066110.2	EnsemblPlants:Solyc08g066110.2.1	UniParc:UPI00000AA8D6	SEG:seg	:

Description

Profilin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93YG7]

Coordinates

chr8:+:54543078..54546098

Molecular Weight (calculated)

14258.1 Da

IEP (calculated)

4.356

GRAVY (calculated)

-0.145

Length

131 amino acids

Sequence
(BLAST)

001: MSWQTYVDEH LLCENEGNHL TSAAIIGQDG TVWAQSANFP QFKPEEITGI MNDFAVPGTL APTGLYLGGT KYMVIQGEPE AVIRGKKGPG GITIKKTNQA
101: LIIGIYDEPM TPGQCNMIVE RLGDYLIEQS L

Best Arabidopsis Sequence Match ( AT2G19760.1 )
(BLAST)

001: MSWQSYVDDH LMCDVEGNHL TAAAILGQDG SVWAQSAKFP QLKPQEIDGI KKDFEEPGFL APTGLFLGGE KYMVIQGEQG AVIRGKKGPG GVTIKKTNQA
101: LVFGFYDEPM TGGQCNLVVE RLGDYLIESE L

Arabidopsis Description

PRO1Profilin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42449]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.