Factsheet for Solyc11g070130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
extracellular: 22892874
extracellular: 29876421

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047737	Potato	cytosol	95.42	95.42
Solyc08g066110.2.1	Tomato	plastid	89.31	89.31
KRH60197	Soybean	cytosol	88.55	88.55
KRH41477	Soybean	nucleus	86.26	86.26
KRH41478	Soybean	cytosol	85.5	85.5
GSMUA_Achr2P19390_001	Banana	cytosol	82.44	82.44
GSMUA_Achr8P20180_001	Banana	cytosol	81.68	81.68
GSMUA_Achr7P13660_001	Banana	cytosol	80.92	80.92
GSMUA_Achr3P17580_001	Banana	cytosol	80.15	80.15
GSMUA_Achr10P...	Banana	cytosol	79.39	79.39
GSMUA_Achr5P06510_001	Banana	cytosol	78.63	78.63
GSMUA_Achr6P14890_001	Banana	cytosol	78.63	78.63
Solyc06g066410.2.1	Tomato	cytosol, unclear	77.86	77.86
Solyc12g044630.1.1	Tomato	cytosol	78.63	77.44
TraesCS3D01G110000.1	Wheat	cytosol	76.34	76.34
TraesCS3A01G108200.1	Wheat	cytosol	76.34	76.34
TraesCS3B01G127200.1	Wheat	cytosol	75.57	75.57
HORVU3Hr1G019670.1	Barley	cytosol	75.57	75.57
Solyc12g008590.1.1	Tomato	cytosol	54.2	72.45
Solyc11g071210.1.1	Tomato	cytosol	16.79	68.75
Os01t0191150-00	Rice	endoplasmic reticulum, extracellular	22.14	50.0
KXG31648	Sorghum	plastid	51.15	36.22

Protein Annotations

MapMan:20.2.2.3	Gene3D:3.30.450.30	EMBL:AY061819	GO:GO:0003674	GO:GO:0003779	GO:GO:0003785
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005938	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0042989	PFAM:PF00235	InterPro:PFN	InterPro:PFN_sf	PRINTS:PR00392	PRINTS:PR01640
ScanProsite:PS00414	PANTHER:PTHR11604	PANTHER:PTHR11604:SF7	InterPro:Profilin_CS	UniProt:Q8VWR0	SMART:SM00392
SUPFAM:SSF55770	EnsemblPlantsGene:Solyc11g070130.1	EnsemblPlants:Solyc11g070130.1.1	UniParc:UPI00000A4BC6	:	:

Description

Profilin [Source:UniProtKB/TrEMBL;Acc:Q8VWR0]

Coordinates

chr11:+:54655309..54657842

Molecular Weight (calculated)

14082.9 Da

IEP (calculated)

4.465

GRAVY (calculated)

-0.074

Length

131 amino acids

Sequence
(BLAST)

001: MSWQTYVDDH LMCDIEGNHL TSAAIIGQDG SVWAQSANFP QFKPEEITAI MNDFAEPGTL APTGLHLGGT KYMVIQGEAG AVIRGKKGAG GITVKKTNQA
101: LIIGIYDEPM TPGQCNMIVE RLGDYIIEQG L

Best Arabidopsis Sequence Match ( AT2G19760.1 )
(BLAST)

001: MSWQSYVDDH LMCDVEGNHL TAAAILGQDG SVWAQSAKFP QLKPQEIDGI KKDFEEPGFL APTGLFLGGE KYMVIQGEQG AVIRGKKGPG GVTIKKTNQA
101: LVFGFYDEPM TGGQCNLVVE RLGDYLIESE L

Arabidopsis Description

PRO1Profilin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42449]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.