Factsheet for Solyc06g066410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 2
plastid 1
extracellular 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042529	Potato	cytosol	93.13	93.13
Solyc12g044630.1.1	Tomato	cytosol	88.55	87.22
GSMUA_Achr1P11580_001	Banana	cytosol	78.63	78.63
KRH74207	Soybean	cytosol	79.39	78.2
KRH60195	Soybean	cytosol	79.39	78.2
KRH49003	Soybean	cytosol	79.39	78.2
KRH41476	Soybean	cytosol	79.39	78.2
Solyc11g070130.1.1	Tomato	extracellular	77.86	77.86
GSMUA_Achr4P01030_001	Banana	cytosol	77.86	77.86
VIT_11s0016g02940.t01	Wine grape	cytosol	78.63	77.44
GSMUA_Achr9P00090_001	Banana	cytosol	77.1	77.1
GSMUA_Achr6P22530_001	Banana	cytosol	77.1	77.1
GSMUA_Achr5P09300_001	Banana	cytosol	77.1	77.1
CDY62034	Canola	cytosol	78.63	76.87
CDY48612	Canola	cytosol	78.63	76.87
AT4G29340.1	Thale cress	cytosol	78.63	76.87
Bra010331.1-P	Field mustard	cytosol	78.63	76.87
Bra011098.1-P	Field mustard	cytosol	78.63	76.87
Bra024148.1-P	Field mustard	cytosol	78.63	76.87
CDY30218	Canola	cytosol	78.63	76.87
CDY14215	Canola	cytosol	78.63	76.87
CDY06821	Canola	cytosol	78.63	76.87
CDY47769	Canola	cytosol	78.63	76.87
CDX81945	Canola	cytosol	77.86	76.12
Bra039019.1-P	Field mustard	cytosol	77.86	76.12
CDY03342	Canola	cytosol	77.86	76.12
AT2G19770.1	Thale cress	cytosol	77.86	76.12
CDY35887	Canola	cytosol	77.86	76.12
Bra036705.1-P	Field mustard	cytosol	77.1	75.37
GSMUA_Achr1P04950_001	Banana	cytosol	74.81	74.81
Bra031101.1-P	Field mustard	cytosol	76.34	74.63
Solyc08g066110.2.1	Tomato	plastid	74.05	74.05
CDY48726	Canola	cytosol	63.36	72.17
Solyc12g008590.1.1	Tomato	cytosol	48.85	65.31
Solyc11g071210.1.1	Tomato	cytosol	15.27	62.5
CDX82721	Canola	cytosol	54.2	51.08

Protein Annotations

MapMan:20.2.2.3	Gene3D:3.30.450.30	GO:GO:0003674	GO:GO:0003779	GO:GO:0003785	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005938	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0042989
UniProt:K4C7R7	PFAM:PF00235	InterPro:PFN	InterPro:PFN_sf	PRINTS:PR00392	PRINTS:PR01640
ScanProsite:PS00414	PANTHER:PTHR11604	PANTHER:PTHR11604:SF7	InterPro:Profilin_CS	SMART:SM00392	SUPFAM:SSF55770
EnsemblPlantsGene:Solyc06g066410.2	EnsemblPlants:Solyc06g066410.2.1	UniParc:UPI0002765D9C	SEG:seg	:	:

Description

Profilin [Source:UniProtKB/TrEMBL;Acc:K4C7R7]

Coordinates

chr6:+:41689535..41690802

Molecular Weight (calculated)

14308.3 Da

IEP (calculated)

4.654

GRAVY (calculated)

0.008

Length

131 amino acids

Sequence
(BLAST)

001: MSWQSYVDDH LMCDLEGHRL TSAAILGFDG SVWAQSSAFP KFKQEEIINI MKDFDEPGFL APTGLFLGGA KYMVIQGEPG AVIRGKKGAG GITIKKTVQA
101: LIFGIYEEPV TPGQCNMVVE KIGDYLIDQG Y

Best Arabidopsis Sequence Match ( AT4G29340.1 )
(BLAST)

001: MSWQTYVDEH LMCDVGDGQG HHLTAAAIVG HDGSVWAQSA NFPQFKGQEF SDIMKDFDEP GHLAPTGLFM AGAKYMVIQG EPGAVIRGKK GAGGITIKKT
101: GQSCVFGIYE EPVTPGQCNM VVERLGDYLL EQGL

Arabidopsis Description

PRO3Profilin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q38904]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.