Factsheet for VIT_11s0016g02940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g03250.t01	Wine grape	cytosol, extracellular	86.47	87.79
KRH74207	Soybean	cytosol	86.47	86.47
KRH49003	Soybean	cytosol	85.71	85.71
KRH60195	Soybean	cytosol	85.71	85.71
KRH41476	Soybean	cytosol	84.96	84.96
VIT_04s0008g00490.t01	Wine grape	cytosol	82.71	83.97
GSMUA_Achr4P01030_001	Banana	cytosol	81.95	83.21
GSMUA_Achr6P22530_001	Banana	cytosol	81.95	83.21
Bra024148.1-P	Field mustard	cytosol	83.46	82.84
Bra011098.1-P	Field mustard	cytosol	83.46	82.84
CDY06821	Canola	cytosol	83.46	82.84
CDY30218	Canola	cytosol	83.46	82.84
CDY47769	Canola	cytosol	83.46	82.84
CDY48612	Canola	cytosol	83.46	82.84
GSMUA_Achr5P09300_001	Banana	cytosol	81.2	82.44
GSMUA_Achr9P00090_001	Banana	cytosol	81.2	82.44
GSMUA_Achr1P11580_001	Banana	cytosol	80.45	81.68
AT4G29340.1	Thale cress	cytosol	81.95	81.34
PGSC0003DMT400069000	Potato	cytosol	81.2	81.2
Solyc12g044630.1.1	Tomato	cytosol	81.2	81.2
VIT_11s0016g02950.t01	Wine grape	cytosol	79.7	80.92
CDX81945	Canola	cytosol	81.2	80.6
CDY03342	Canola	cytosol	81.2	80.6
CDY62034	Canola	cytosol	80.45	79.85
AT2G19770.1	Thale cress	cytosol	80.45	79.85
Bra036705.1-P	Field mustard	cytosol	80.45	79.85
PGSC0003DMT400042529	Potato	cytosol	78.2	79.39
CDY14215	Canola	cytosol	79.7	79.1
Bra031101.1-P	Field mustard	cytosol	79.7	79.1
Bra010331.1-P	Field mustard	cytosol	79.7	79.1
Solyc06g066410.2.1	Tomato	cytosol, unclear	77.44	78.63
GSMUA_Achr1P04950_001	Banana	cytosol	77.44	78.63
CDY35887	Canola	cytosol	78.95	78.36
Bra039019.1-P	Field mustard	cytosol	78.95	78.36
CDY48726	Canola	cytosol	67.67	78.26
PGSC0003DMT400088098	Potato	cytosol	75.19	75.76
Solyc11g071210.1.1	Tomato	cytosol	16.54	68.75
CDX82721	Canola	cytosol	56.39	53.96

Protein Annotations

EntrezGene:100268013	wikigene:100268013	MapMan:20.2.2.3	Gene3D:3.30.450.30	UniProt:A5BLM8	EMBL:AM463779
ProteinID:CAN70308	ProteinID:CAN70308.1	ProteinID:CBI27981	ProteinID:CBI27981.3	EMBL:FN595756	GO:GO:0003674
GO:GO:0003779	GO:GO:0003785	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005938	GO:GO:0008150	GO:GO:0009987
GO:GO:0015629	GO:GO:0016043	GO:GO:0042989	EntrezGene:LOC100268013	wikigene:LOC100268013	PFAM:PF00235
InterPro:PFN	InterPro:PFN_sf	PRINTS:PR00392	PRINTS:PR01640	ScanProsite:PS00414	PANTHER:PTHR11604
PANTHER:PTHR11604:SF7	InterPro:Profilin_CS	SMART:SM00392	SUPFAM:SSF55770	UniParc:UPI00015212F5	ArrayExpress:VIT_11s0016g02940
EnsemblPlantsGene:VIT_11s0016g02940	EnsemblPlants:VIT_11s0016g02940.t01	unigene:Vvi.20380	RefSeq:XP_002283427	RefSeq:XP_002283427.2	RefSeq:XP_010656249.1
SEG:seg	:	:	:	:	:

Description

Profilin [Source:UniProtKB/TrEMBL;Acc:A5BLM8]

Coordinates

chr11:+:2361047..2364153

Molecular Weight (calculated)

14244.0 Da

IEP (calculated)

4.622

GRAVY (calculated)

-0.108

Length

133 amino acids

Sequence
(BLAST)

001: MSWQTYVDDH LMCEIDGQGQ HLTAAAIVGH DGSVWAQSTS FPEFKTPEIT GIMNDFAEPG HLAPTGLYLG GTKYMVIQGE PGAVIRGKKG SGGITIKKTG
101: QALVFGIYEE PVTPGQCNMV VERLGDYLVD QGL

Best Arabidopsis Sequence Match ( AT4G29340.1 )
(BLAST)

001: MSWQTYVDEH LMCDVGDGQG HHLTAAAIVG HDGSVWAQSA NFPQFKGQEF SDIMKDFDEP GHLAPTGLFM AGAKYMVIQG EPGAVIRGKK GAGGITIKKT
101: GQSCVFGIYE EPVTPGQCNM VVERLGDYLL EQGL

Arabidopsis Description

PRO3Profilin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q38904]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.