Factsheet for PGSC0003DMT400042529

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g066410.2.1	Tomato	cytosol, unclear	93.13	93.13
PGSC0003DMT400069000	Potato	cytosol	87.79	86.47
KRH49003	Soybean	cytosol	80.92	79.7
KRH41476	Soybean	cytosol	80.92	79.7
Bra010331.1-P	Field mustard	cytosol	80.92	79.1
CDY62034	Canola	cytosol	80.92	79.1
CDY14215	Canola	cytosol	80.92	79.1
KRH74207	Soybean	cytosol	80.15	78.95
KRH60195	Soybean	cytosol	80.15	78.95
GSMUA_Achr1P11580_001	Banana	cytosol	78.63	78.63
VIT_11s0016g02940.t01	Wine grape	cytosol	79.39	78.2
CDY03342	Canola	cytosol	79.39	77.61
CDY30218	Canola	cytosol	79.39	77.61
CDY35887	Canola	cytosol	79.39	77.61
CDY47769	Canola	cytosol	79.39	77.61
CDY48612	Canola	cytosol	79.39	77.61
CDY06821	Canola	cytosol	79.39	77.61
AT4G29340.1	Thale cress	cytosol	79.39	77.61
Bra011098.1-P	Field mustard	cytosol	79.39	77.61
CDX81945	Canola	cytosol	79.39	77.61
Bra024148.1-P	Field mustard	cytosol	79.39	77.61
Bra036705.1-P	Field mustard	cytosol	79.39	77.61
Bra039019.1-P	Field mustard	cytosol	79.39	77.61
GSMUA_Achr5P09300_001	Banana	cytosol	77.1	77.1
AT2G19770.1	Thale cress	cytosol	78.63	76.87
Bra031101.1-P	Field mustard	cytosol	78.63	76.87
GSMUA_Achr9P00090_001	Banana	cytosol	76.34	76.34
GSMUA_Achr6P22530_001	Banana	cytosol	76.34	76.34
GSMUA_Achr4P01030_001	Banana	cytosol	76.34	76.34
PGSC0003DMT400047737	Potato	cytosol	76.34	76.34
GSMUA_Achr1P04950_001	Banana	cytosol	74.81	74.81
CDY48726	Canola	cytosol	65.65	74.78
PGSC0003DMT400065464	Potato	cytosol	74.05	74.05
PGSC0003DMT400000786	Potato	cytosol	70.99	70.99
PGSC0003DMT400088098	Potato	cytosol	68.7	68.18
CDX82721	Canola	cytosol	55.73	52.52

Protein Annotations

EntrezGene:102599624	MapMan:20.2.2.3	Gene3D:3.30.450.30	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	UniProt:M1BD69
PFAM:PF00235	InterPro:PFN	InterPro:PFN_sf	EnsemblPlantsGene:PGSC0003DMG400016496	PGSC:PGSC0003DMG400016496	EnsemblPlants:PGSC0003DMT400042529
PRINTS:PR00392	PRINTS:PR01640	ScanProsite:PS00414	PANTHER:PTHR11604	PANTHER:PTHR11604:SF7	InterPro:Profilin_CS
SMART:SM00392	SUPFAM:SSF55770	UniParc:UPI0002963474	RefSeq:XP_006356135.1	SEG:seg	:

Description

Profilin-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400016496]

Coordinates

chr6:+:49106409..49108201

Molecular Weight (calculated)

14277.2 Da

IEP (calculated)

4.641

GRAVY (calculated)

-0.041

Length

131 amino acids

Sequence
(BLAST)

001: MSWQTYVDDH LMCDLDGHRL ASAAILGFDG SVWAQSPAFP KFKPEEIINI MKDFDEPGFL APTGLFLSGA KYMVIQGEPG AVIRGKKGSG GITIKKTGQS
101: LIFGIYEEPV TPGQCNMVVE KIGDYLIDQG Y

Best Arabidopsis Sequence Match ( AT2G19770.1 )
(BLAST)

001: MSWQAYVDEH LMCDVGDGQG HHLTAAAIIG HDGSVWAQSA NFPQFKPQEI TDIMKDFDEP GHLAPTGMFL AGLKYMVIQG EPNAVIRGKK GAGGITIKKT
101: GQSMVFGLYE EPVTPGQCNM VVERLGDYLI EQGL

Arabidopsis Description

PRO4Profilin [Source:UniProtKB/TrEMBL;Acc:Q1PF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.