Factsheet for PGSC0003DMT400088098

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g02940.t01	Wine grape	cytosol	75.76	75.19
GSMUA_Achr4P01030_001	Banana	cytosol	74.24	74.81
PGSC0003DMT400047737	Potato	cytosol	74.24	74.81
GSMUA_Achr6P22530_001	Banana	cytosol	73.48	74.05
GSMUA_Achr9P00090_001	Banana	cytosol	72.73	73.28
GSMUA_Achr1P11580_001	Banana	cytosol	71.97	72.52
KRH74207	Soybean	cytosol	72.73	72.18
PGSC0003DMT400069000	Potato	cytosol	71.97	71.43
GSMUA_Achr5P09300_001	Banana	cytosol	70.45	70.99
KRH60195	Soybean	cytosol	71.21	70.68
PGSC0003DMT400065464	Potato	cytosol	69.7	70.23
KRH49003	Soybean	cytosol	70.45	69.92
KRH41476	Soybean	cytosol	70.45	69.92
Bra024148.1-P	Field mustard	cytosol	70.45	69.4
CDY48612	Canola	cytosol	70.45	69.4
CDY47769	Canola	cytosol	70.45	69.4
CDY30218	Canola	cytosol	70.45	69.4
CDY06821	Canola	cytosol	70.45	69.4
Bra011098.1-P	Field mustard	cytosol	70.45	69.4
Solyc11g071210.1.1	Tomato	cytosol	16.67	68.75
PGSC0003DMT400042529	Potato	cytosol	68.18	68.7
CDY62034	Canola	cytosol	69.7	68.66
GSMUA_Achr1P04950_001	Banana	cytosol	67.42	67.94
PGSC0003DMT400000786	Potato	cytosol	67.42	67.94
CDY14215	Canola	cytosol	68.94	67.91
CDX81945	Canola	cytosol	68.94	67.91
Bra031101.1-P	Field mustard	cytosol	68.94	67.91
Bra010331.1-P	Field mustard	cytosol	68.94	67.91
AT4G29340.1	Thale cress	cytosol	68.18	67.16
AT2G19770.1	Thale cress	cytosol	67.42	66.42
CDY03342	Canola	cytosol	67.42	66.42
Bra036705.1-P	Field mustard	cytosol	67.42	66.42
CDY35887	Canola	cytosol	66.67	65.67
Bra039019.1-P	Field mustard	cytosol	66.67	65.67
CDY48726	Canola	cytosol	55.3	63.48
CDX82721	Canola	cytosol	47.73	45.32

Protein Annotations

EntrezGene:102579552	MapMan:20.2.2.3	Gene3D:3.30.450.30	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	UniProt:M1DF86
PFAM:PF00235	InterPro:PFN	InterPro:PFN_sf	EnsemblPlantsGene:PGSC0003DMG400037669	PGSC:PGSC0003DMG400037669	EnsemblPlants:PGSC0003DMT400088098
PRINTS:PR00392	PRINTS:PR01640	ScanProsite:PS00414	PANTHER:PTHR11604	PANTHER:PTHR11604:SF7	InterPro:Profilin_CS
SMART:SM00392	SUPFAM:SSF55770	UniParc:UPI000296517F	RefSeq:XP_006353503.1	SEG:seg	:

Description

Profilin [Source:PGSC_GENE;Acc:PGSC0003DMG400037669]

Coordinates

chr12:-:3965700..3967668

Molecular Weight (calculated)

14331.3 Da

IEP (calculated)

5.127

GRAVY (calculated)

-0.017

Length

132 amino acids

Sequence
(BLAST)

001: MSWQTYIDDH LMCEIEGGGQ LKAAAIVGHD SSVWAQSTNF PKFNAEEIKP ILIEFNDPGH LAPTGIFLGG TKYMVIQGEF GAVIRGKKGS GGITIKKTNK
101: ALLFGIYDEP VVAGQCNLIV ERLGDHLIDQ DL

Best Arabidopsis Sequence Match ( AT2G19760.1 )
(BLAST)

001: MSWQSYVDDH LMCDVEGNHL TAAAILGQDG SVWAQSAKFP QLKPQEIDGI KKDFEEPGFL APTGLFLGGE KYMVIQGEQG AVIRGKKGPG GVTIKKTNQA
101: LVFGFYDEPM TGGQCNLVVE RLGDYLIESE L

Arabidopsis Description

PRO1Profilin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42449]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.