CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plastid 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60197	Soybean	cytosol	96.18	96.18
KRH41478	Soybean	cytosol	92.37	92.37
PGSC0003DMT400065464	Potato	cytosol	87.02	87.02
Solyc11g070130.1.1	Tomato	extracellular	86.26	86.26
PGSC0003DMT400047737	Potato	cytosol	86.26	86.26
GSMUA_Achr2P19390_001	Banana	cytosol	85.5	85.5
Solyc08g066110.2.1	Tomato	plastid	84.73	84.73
GSMUA_Achr3P17580_001	Banana	cytosol	82.44	82.44
GSMUA_Achr7P13660_001	Banana	cytosol	80.92	80.92
GSMUA_Achr8P20180_001	Banana	cytosol	80.92	80.92
GSMUA_Achr10P...	Banana	cytosol	80.15	80.15
GSMUA_Achr5P06510_001	Banana	cytosol	79.39	79.39
GSMUA_Achr6P14890_001	Banana	cytosol	78.63	78.63
TraesCS3D01G110000.1	Wheat	cytosol	77.86	77.86
TraesCS3A01G108200.1	Wheat	cytosol	77.86	77.86
TraesCS3B01G127200.1	Wheat	cytosol	77.1	77.1
HORVU3Hr1G019670.1	Barley	cytosol	77.1	77.1
KRH60195	Soybean	cytosol	77.86	76.69
KRH09953	Soybean	cytosol	76.34	76.34
KRH49003	Soybean	cytosol	77.1	75.94
KRH74207	Soybean	cytosol	76.34	75.19
KRH41476	Soybean	cytosol	76.34	75.19
Os01t0191150-00	Rice	endoplasmic reticulum, extracellular	24.43	55.17
KXG31648	Sorghum	plastid	55.73	39.46

Protein Annotations

EntrezGene:100127411	MapMan:20.2.2.3	Gene3D:3.30.450.30	UniProt:A7XZJ7	EMBL:ACUP02004768	EMBL:BT091394
EMBL:EU106621	EnsemblPlantsGene:GLYMA_08G032500	GO:GO:0003674	GO:GO:0003779	GO:GO:0003785	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005938	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0042989
EnsemblPlants:KRH41477	ProteinID:KRH41477	ProteinID:KRH41477.1	PFAM:PF00235	InterPro:PFN	InterPro:PFN_sf
PRINTS:PR00392	PRINTS:PR01640	ScanProsite:PS00414	PANTHER:PTHR11604	PANTHER:PTHR11604:SF7	InterPro:Profilin_CS
SMART:SM00392	SUPFAM:SSF55770	UniParc:UPI00015C6B81	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:2596126..2598203

Molecular Weight (calculated)

14062.8 Da

IEP (calculated)

4.465

GRAVY (calculated)

-0.138

Length

131 amino acids

Sequence
(BLAST)

001: MSWQAYVDDH LLCEIEGNHL THAAIIGQDG SVWAQSTNFP QFKPEEITAI NNDFNEPGSL APTGLYIGGT KYMVIQGEPG AVIRGKKGPG GVTVKKTGAA
101: LIIGIYDEPM TPGQCNMVVE RLGDYLIDQG L

Best Arabidopsis Sequence Match ( AT4G29350.1 )
(BLAST)

001: MSWQSYVDDH LMCEVEGNHL THAAIFGQDG SVWAQSSAFP QLKPAEIAGI NKDFEEAGHL APTGLFLGGE KYMVVQGEAG AVIRGKKGPG GVTIKKTTQA
101: LVFGIYDEPM TGGQCNLVVE RLGDYLIESG L

Arabidopsis Description

PRO2Profilin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q42418]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.