Factsheet for TraesCS1D01G376300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G389200.1	Wheat	cytosol	99.47	99.47
TraesCS4D01G103100.1	Wheat	cytosol	97.63	97.63
TraesCS4D01G103300.1	Wheat	cytosol	88.65	96.83
HORVU4Hr1G016770.2	Barley	cytosol	96.83	96.58
TraesCS1A01G370100.1	Wheat	cytosol	96.57	96.32
TraesCS5D01G196300.2	Wheat	cytosol	93.67	93.67
EES08380	Sorghum	cytosol	92.08	92.08
Zm00001d049059_P001	Maize	cytosol, extracellular	91.56	91.56
Os11t0210500-01	Rice	cytosol, plastid	91.29	91.29
TraesCS4D01G103000.1	Wheat	golgi	86.81	86.81
PGSC0003DMT400079071	Potato	cytosol	85.75	85.53
GSMUA_Achr2P08040_001	Banana	cytosol	84.17	83.95
VIT_18s0001g15410.t01	Wine grape	cytosol	83.91	83.68
GSMUA_Achr8P29470_001	Banana	cytosol	83.38	83.16
KRH64058	Soybean	cytosol, endoplasmic reticulum	81.79	81.36
GSMUA_Achr9P08450_001	Banana	cytosol	81.27	81.05
Solyc06g059740.2.1	Tomato	plastid	81.53	80.47
TraesCS6D01G371200.1	Wheat	golgi	58.05	57.74
TraesCS1D01G052200.1	Wheat	cytosol	54.35	52.28
TraesCS4D01G303800.1	Wheat	cytosol	48.81	48.43
TraesCS6D01G217000.3	Wheat	cytosol	49.08	48.06
TraesCS4D01G303900.1	Wheat	cytosol	48.81	47.8
TraesCS2D01G170900.1	Wheat	cytosol	50.13	45.67
TraesCS2D01G170800.1	Wheat	cytosol	45.91	45.31
CDX73268	Canola	cytosol	3.96	33.33
TraesCS7D01G319100.1	Wheat	mitochondrion	30.87	28.19
TraesCS7D01G269800.1	Wheat	cytosol	24.8	25.75

Protein Annotations

MapMan:3.11.1.2	Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240
ScanProsite:PS00059	PANTHER:PTHR43880	PANTHER:PTHR43880:SF17	SUPFAM:SSF50129	SUPFAM:SSF51735	EnsemblPlantsGene:TraesCS1D01G376300
EnsemblPlants:TraesCS1D01G376300.1	TIGR:cd08301	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:452625415..452627557

Molecular Weight (calculated)

41098.0 Da

IEP (calculated)

6.431

GRAVY (calculated)

0.061

Length

379 amino acids

Sequence
(BLAST)

001: MATAGKVIKC KAAVAWEAGK PLSIEEVEVA PPQAMEVRVK ILYTALCHTD VYFWEAKGQT PVFPRILGHE AGGIVESVGE GVTELVPGDH VLPVFTGECK
101: DCAHCKSEES NLCDLLRINV DRGVMIGDGQ SRFTINGKPI FHFVGTSTFS EYTVIHVGCL AKINPEAPLD KVCVLSCGIS TGLGATLNVA KPKKGSTVAI
201: FGLGAVGLAA MEGARMAGAS RIIGVDLNPA KYEQAKKFGC TDFVNPKDHS KPVQEVLVEM TNGGVDRAVE CTGHIDAMIA AFECVHDGWG VAVLVGVPHK
301: EAVFKTYPMN FLNERTLKGT FFGNYKPRTD LPEVVEMYMR KELELEKFIT HSVPFSQINT AFDLMLKGEG LRCIMRMDQ

Best Arabidopsis Sequence Match ( AT1G64710.1 )
(BLAST)

001: METQGKVITC KAAVAWGAGE PLVMEDVKVD PPQRLEVRIR ILFTSICHTD LSAWKGENEA QRAYPRILGH EAAGIVESVG EGVEEMMAGD HVLPIFTGEC
101: GDCRVCKRDG ANLCERFRVD PMKKVMVTDG KTRFFTSKDN KPIYHFLNTS TFSEYTVIDS ACVLKVDPLF PLEKISLLSC GVSTGVGAAW NVADIQPAST
201: VAIFGLGAVG LAVAEGARAR GASKIIGIDI NPDKFQLGRE AGISEFINPK ESDKAVHERV MEITEGGVEY SFECAGSIEA LREAFLSTNS GVGVTVMLGV
301: HASPQLLPIH PMELFQGRSI TASVFGGFKP KTQLPFFITQ CLQGLLNLDL FISHQLPFHD INEAMQLLHQ GKALRCLLHL

Arabidopsis Description

Alcohol dehydrogenase-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ49]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.