Factsheet for TraesCS4D01G103000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G202100.2	Wheat	cytosol	100.0	100.0
TraesCS4B01G106300.1	Wheat	cytosol, golgi	99.21	99.21
HORVU4Hr1G016810.8	Barley	cytosol	97.89	97.89
KXG28254	Sorghum	cytosol	67.81	95.9
KXG37606	Sorghum	cytosol	95.78	95.78
Zm00001d033931_P002	Maize	cytosol, extracellular, plasma membrane	95.25	95.25
Os11t0210300-01	Rice	plasma membrane	95.25	95.25
HORVU5Hr1G010490.1	Barley	cytosol	25.07	95.0
HORVU1Hr1G003130.1	Barley	cytosol	33.25	94.03
HORVU6Hr1G063060.1	Barley	cytosol	25.86	91.59
HORVU2Hr1G020900.3	Barley	cytosol	59.89	89.02
HORVU3Hr1G034820.7	Barley	cytosol	68.34	87.8
TraesCS1D01G376300.1	Wheat	cytosol, golgi	86.81	86.81
TraesCS4D01G103300.1	Wheat	cytosol	79.16	86.46
GSMUA_Achr2P08040_001	Banana	cytosol	86.28	86.05
TraesCS4D01G103100.1	Wheat	cytosol	86.02	86.02
HORVU7Hr1G058160.4	Barley	cytosol	48.02	85.85
TraesCS5D01G196300.2	Wheat	cytosol	85.49	85.49
PGSC0003DMT400079071	Potato	cytosol	85.49	85.26
GSMUA_Achr8P29470_001	Banana	cytosol	84.7	84.47
KRH64058	Soybean	cytosol, endoplasmic reticulum	84.7	84.25
VIT_18s0001g15410.t01	Wine grape	cytosol	84.17	83.95
HORVU0Hr1G008870.3	Barley	cytosol	58.58	83.46
GSMUA_Achr9P08450_001	Banana	cytosol	83.64	83.42
HORVU5Hr1G051820.1	Barley	cytosol	46.44	83.02
Solyc06g059740.2.1	Tomato	plastid	82.32	81.25
TraesCS6D01G371200.1	Wheat	golgi	59.89	59.58
HORVU0Hr1G010220.2	Barley	cytosol	33.77	56.39
TraesCS1D01G052200.1	Wheat	cytosol	54.62	52.54
TraesCS6D01G217000.3	Wheat	cytosol	51.19	50.13
TraesCS4D01G303800.1	Wheat	cytosol	48.55	48.17
TraesCS4D01G303900.1	Wheat	cytosol	47.23	46.25
TraesCS2D01G170900.1	Wheat	cytosol	49.34	44.95
TraesCS2D01G170800.1	Wheat	cytosol	45.38	44.79
CDX73268	Canola	cytosol	3.43	28.89
TraesCS7D01G319100.1	Wheat	mitochondrion	29.29	26.75
TraesCS7D01G269800.1	Wheat	cytosol	24.8	25.75

Protein Annotations

MapMan:3.11.1.2	Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240
ScanProsite:PS00059	PANTHER:PTHR43880	PANTHER:PTHR43880:SF22	SUPFAM:SSF50129	SUPFAM:SSF51735	EnsemblPlantsGene:TraesCS4D01G103000
EnsemblPlants:TraesCS4D01G103000.1	TIGR:cd08301	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:81918439..81921803

Molecular Weight (calculated)

41017.7 Da

IEP (calculated)

6.574

GRAVY (calculated)

-0.011

Length

379 amino acids

Sequence
(BLAST)

001: MATAGKVIKC KAAVAWEAGK PLSMEEVEVA PPQAMEVRVK ILFTSLCHTD VYFWEAKGQT PMFPRIFGHE AGGIVESVGE GVTELAPGDH VLPVFTGECK
101: ECPHCKSAES NMCDLLRINT DRGVMIGDGK SRFSIDGKPI YHFVGTSTFS EYTVMHVGCV AKINPEAPLD KVCVLSCGIS TGLGASINVA KPPKGSTVAI
201: FGLGAVGLAA AEGARIAGAS RIIGVDLNAS RFEEARKFGC TEFVNPKDHT KPVQQVLAEM TNGGVDRSVE CTGNVNAMIQ AFECVHDGWG VAVLVGVPHK
301: DAEFKTHPMN FLNERTLKGT FFGNFKPRTD LPNVVEMYMR KELEVEKFIT HSVPFSEINK AFDLMAKGEG IRCIIRMEN

Best Arabidopsis Sequence Match ( AT1G77120.1 )
(BLAST)

001: MSTTGQIIRC KAAVAWEAGK PLVIEEVEVA PPQKHEVRIK ILFTSLCHTD VYFWEAKGQT PLFPRIFGHE AGGIVESVGE GVTDLQPGDH VLPIFTGECG
101: ECRHCHSEES NMCDLLRINT ERGGMIHDGE SRFSINGKPI YHFLGTSTFS EYTVVHSGQV AKINPDAPLD KVCIVSCGLS TGLGATLNVA KPKKGQSVAI
201: FGLGAVGLGA AEGARIAGAS RIIGVDFNSK RFDQAKEFGV TECVNPKDHD KPIQQVIAEM TDGGVDRSVE CTGSVQAMIQ AFECVHDGWG VAVLVGVPSK
301: DDAFKTHPMN FLNERTLKGT FFGNYKPKTD IPGVVEKYMN KELELEKFIT HTVPFSEINK AFDYMLKGES IRCIITMGA

Arabidopsis Description

ADH1Alcohol dehydrogenase class-P [Source:UniProtKB/Swiss-Prot;Acc:P06525]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.