Factsheet for TraesCS1D01G426600.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G418900.1	Wheat	extracellular, vacuole	94.64	94.47
TraesCS1B01G448900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	93.57	92.58
HORVU1Hr1G091500.1	Barley	extracellular, vacuole	90.36	88.93
Os08t0158400-00	Rice	endoplasmic reticulum, extracellular, vacuole	71.79	71.53
KXG24485	Sorghum	extracellular	73.39	71.35
Zm00001d024541_P001	Maize	vacuole	70.71	70.97
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	50.71	56.02
KRH34335	Soybean	vacuole	50.0	50.91
KRG92465	Soybean	golgi, vacuole	50.0	50.91
PGSC0003DMT400009569	Potato	cytosol	42.5	50.0
TraesCS3D01G367100.1	Wheat	vacuole	47.5	49.91
TraesCS3D01G367200.1	Wheat	vacuole	47.5	49.72
Solyc04g080400.1.1	Tomato	extracellular	45.89	45.57
TraesCS7D01G368500.1	Wheat	plasma membrane, vacuole	38.93	42.08
TraesCS7D01G369200.1	Wheat	extracellular, vacuole	39.64	41.97
TraesCS5D01G268800.1	Wheat	vacuole	38.93	41.52
TraesCS7D01G124500.1	Wheat	plasma membrane, vacuole	37.68	40.58
TraesCS2D01G151500.1	Wheat	vacuole	38.21	40.45
TraesCS1D01G338700.1	Wheat	plasma membrane	38.57	40.3
TraesCS1D01G443200.1	Wheat	cytosol	22.68	40.19
TraesCS2D01G006000.1	Wheat	plastid	36.07	39.92
TraesCS7D01G369100.1	Wheat	plasma membrane, vacuole	39.82	39.47
TraesCS1D01G433600.1	Wheat	vacuole	37.5	38.89
TraesCS7D01G368700.1	Wheat	unclear	35.71	38.68
TraesCS7D01G369000.1	Wheat	extracellular, vacuole	35.89	38.65
TraesCS2D01G126200.1	Wheat	plasma membrane, vacuole	39.29	38.26
TraesCS7D01G393900.1	Wheat	vacuole	35.71	38.24
TraesCS7D01G368800.1	Wheat	vacuole	35.18	37.88
TraesCS7D01G472000.1	Wheat	vacuole	35.18	37.74
TraesCS5D01G309100.1	Wheat	vacuole	35.0	37.62
TraesCS2D01G052300.1	Wheat	plastid	35.18	37.38
TraesCS4D01G223000.1	Wheat	plasma membrane	37.32	36.93
TraesCS2D01G126400.1	Wheat	golgi, vacuole	38.04	36.79
TraesCS2D01G052700.1	Wheat	unclear	34.29	36.36
TraesCS2D01G052400.1	Wheat	vacuole	25.89	36.07
TraesCS3D01G113700.1	Wheat	extracellular, plasma membrane, vacuole	33.93	36.05
TraesCS4D01G101000.1	Wheat	golgi	34.82	35.91
TraesCS2D01G052500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	33.39	35.42
TraesCS2D01G543700.1	Wheat	unclear	35.36	35.29
TraesCS7D01G368900.1	Wheat	cytosol, peroxisome, plasma membrane	13.93	32.64
VIT_18s0089g01200.t01	Wine grape	plasma membrane	50.54	24.5

Protein Annotations

Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	InterPro:BBE	InterPro:FAD-bd_2
InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114
InterPro:IPR016166	InterPro:IPR016167	InterPro:Oxid_FAD_bind_N	InterPro:Oxy_OxRdtase_FAD_BS	PFAM:PF01565	PFAM:PF08031
ScanProsite:PS00862	PFscan:PS51387	PANTHER:PTHR32448	PANTHER:PTHR32448:SF13	SUPFAM:SSF56176	SignalP:SignalP-noTM
EnsemblPlantsGene:TraesCS1D01G426600	EnsemblPlants:TraesCS1D01G426600.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:+:479610976..479612658

Molecular Weight (calculated)

60385.4 Da

IEP (calculated)

6.233

GRAVY (calculated)

-0.017

Length

560 amino acids

Sequence
(BLAST)

001: MAISVLFSLL LRLLAVQAAS HGSVGNDDDD SALMTSCLAA AGVRNVTTRH SSAYAAALAF SIQNLRFAAA CAHHGPAAVV VPASLAELRA AVLCAREAGL
101: VVRLRSGGHS YEGLSYTMDD AGGFVVVDLV ALDRVRVDAG TRTAWVQSGA TLGQVYHAVA ASSKTLAFSA GSCPTVGSGG HIAGGGFGLL SRKYGLAADN
201: VIDALLVDAD GRVLDREGMG EEVFWAIRGG GGGTWGAVYA WRVKLSPVPE RVTVFVVNRP GTVESVARLV STWQHVAPWL PDEFYLSAFV GAGLPEADGS
301: GISVTFKGFY LGRSHEALEI LSTRFPEIGL SDLNAREMSW IDSVVYFSGL PEGSSTSDLT DRVLHDKNYF KAKSDFVRRP TPIGELEGAI EFLSKQPKAY
401: VILDPYGGAM DRIAADDLPF PHRKGNIHGI QHLIAWTADD DGHREEYMDW LRRFYDLMGA YVSNGPRTAY INYLDLDLGT NNNPSAAHPH HPIIGDDGSP
501: FNSEVEASRT WGQRYFLSNY DRLVRAKTTI DPENVFRNAQ SIPPLFVGAL QMTRRIAHDI

Best Arabidopsis Sequence Match ( AT1G30760.1 )
(BLAST)

001: MAFVLMNNTN AFLVTLLLLS LSYIPLSFST IQQDFVMCLV DNSDASFPMD SSFFTHDLNA SSFKLALETS AQNLRYLMPS NPKPEFIFEP LYETHVQAAV
101: LCAKKLKLHL RLRSGGHDYE GLSYVSEMET AFVIVDLSKL RQISVDIESN SAWVHAGASI GEVYYRIQEK SKIHGFPAGL CTSLGIGGHI IGGAYGSMMR
201: KFGLGADNVL DARIVDADGK ILNRAAMGED VFWAIRGGGG GSFGVILAWK IKLVPVPEIV TVFTVTRTLE QDGTKLLYKW QQVADKLDED LFIRVIIQPT
301: SKTPKSKERT ISTSYQGQFL GDANRLLQVM QRSFPQLGLT KKDCLETSWI KSVMYIAGFP STAPSEALLD GKSLFKNYFK AKSDYVEEPI PVEGLEGLWE
401: KLLEEDSPLT IWNPYGGMMA KIPETETPFP HRSGTLFKIQ WLTLWQDGKT SEAKHMGWMR EMYSYMEQYV SKSPRSAYVN YRDLDLGMNG KGSDAREWGN
501: RYFKGNFERL VEIKAKFDPE NFFRHEQSIP TELE

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30760]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.