Factsheet for PGSC0003DMT400009569

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g080400.1.1	Tomato	extracellular	93.07	78.55
KRG92465	Soybean	golgi, vacuole	63.24	54.73
KRH34335	Soybean	vacuole	62.4	54.0
Os08t0158300-00	Rice	peroxisome	43.07	50.99
HORVU3Hr1G083890.1	Barley	cytosol, peroxisome	37.6	50.85
PGSC0003DMT400080465	Potato	cytosol	40.13	47.04
PGSC0003DMT400054571	Potato	cytosol	39.71	46.55
PGSC0003DMT400054560	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.03	44.63
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	47.48	44.58
Zm00001d024541_P001	Maize	vacuole	51.47	43.91
GSMUA_Achr1P24050_001	Banana	golgi	43.7	43.88
PGSC0003DMT400054385	Potato	plastid	45.38	43.64
Os08t0158400-00	Rice	endoplasmic reticulum, extracellular, vacuole	51.26	43.42
PGSC0003DMT400054391	Potato	cytosol, nucleus, peroxisome	39.29	43.39
KXG24485	Sorghum	extracellular	52.31	43.23
Zm00001d049536_P001	Maize	vacuole	49.16	43.01
TraesCS3B01G406900.1	Wheat	vacuole	48.11	42.96
Os08t0343600-00	Rice	cytosol, peroxisome	48.32	42.91
HORVU1Hr1G091500.1	Barley	extracellular, vacuole	51.26	42.88
TraesCS3A01G374600.1	Wheat	vacuole	47.69	42.51
TraesCS1D01G426600.1	Wheat	extracellular, vacuole	50.0	42.5
TraesCS1A01G418900.1	Wheat	extracellular, vacuole	50.0	42.42
TraesCS3D01G367100.1	Wheat	vacuole	47.06	42.03
TraesCS1B01G448900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	49.79	41.87
TraesCS3A01G374700.1	Wheat	vacuole	47.06	41.87
TraesCS3D01G367200.1	Wheat	vacuole	47.06	41.87
PGSC0003DMT400054564	Potato	cytosol, plastid	43.07	41.5
PGSC0003DMT400054574	Potato	mitochondrion, peroxisome	44.54	41.33
PGSC0003DMT400054387	Potato	plasma membrane, vacuole	46.01	41.32
HORVU3Hr1G083860.2	Barley	mitochondrion, plastid	28.78	41.27
HORVU3Hr1G083840.1	Barley	mitochondrion, plastid	47.48	41.24
PGSC0003DMT400012979	Potato	cytosol	34.45	41.21
KXG24484	Sorghum	plastid	47.06	41.03
EES14581	Sorghum	extracellular	48.11	40.97
Zm00001d049539_P001	Maize	extracellular, vacuole	47.06	40.88
PGSC0003DMT400080468	Potato	vacuole	44.96	40.53
PGSC0003DMT400054386	Potato	vacuole	45.17	40.41
PGSC0003DMT400080467	Potato	vacuole	45.38	40.15
Zm00001d022215_P001	Maize	plastid	43.91	39.66
OQU79940	Sorghum	endoplasmic reticulum	45.8	39.21
PGSC0003DMT400086243	Potato	vacuole	42.02	38.02
PGSC0003DMT400054393	Potato	plasma membrane, vacuole	42.65	38.02
PGSC0003DMT400043091	Potato	extracellular	41.81	37.62
PGSC0003DMT400046308	Potato	extracellular	42.86	37.5
PGSC0003DMT400057528	Potato	extracellular	42.02	37.17
PGSC0003DMT400036039	Potato	extracellular, plasma membrane, vacuole	42.44	36.46
PGSC0003DMT400062414	Potato	plasma membrane, vacuole	42.23	36.28
PGSC0003DMT400057680	Potato	extracellular, plasma membrane, vacuole	40.13	35.57
PGSC0003DMT400089776	Potato	golgi, vacuole	40.34	35.1
PGSC0003DMT400057523	Potato	extracellular, golgi, vacuole	41.18	34.81
VIT_18s0089g01200.t01	Wine grape	plasma membrane	64.29	26.49
Os08t0158200-02	Rice	extracellular	2.31	2.08

Protein Annotations

Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	InterPro:BBE	InterPro:FAD-bd_2
InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114
GO:GO:0071949	InterPro:IPR016166	InterPro:IPR016167	UniProt:M0ZWI7	InterPro:Oxid_FAD_bind_N	PFAM:PF01565
PFAM:PF08031	EnsemblPlantsGene:PGSC0003DMG400003732	PGSC:PGSC0003DMG400003732	EnsemblPlants:PGSC0003DMT400009569	PFscan:PS51387	PANTHER:PTHR32448
PANTHER:PTHR32448:SF13	SUPFAM:SSF56176	UniParc:UPI000296E743	SEG:seg	:	:

Description

D-lactate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400003732]

Coordinates

chr4:-:69786121..69787551

Molecular Weight (calculated)

53016.8 Da

IEP (calculated)

8.259

GRAVY (calculated)

-0.089

Length

476 amino acids

Sequence
(BLAST)

001: MPKPMVIIVP ESKEQIVSSV MCCIRGSYEI RVRCGGHSYE GTSSVTLEGG SSFVIIDLMK LDDVSLDLES GTAWVQGGAT LGQTYYAISR ASNVHGFAAG
101: SCPTVGVGGH ISGGGFGFLS RKYGLAADNV VDALLVDAEG RILDRESMGE DVFWAIRGGG GGIWGVIYAW KIQLLKVPKI VTSFILSRPG SKRYVSQLVH
201: KWQLVAPKLD DEFYLSVSIR GVASRGIHEM NAQFNGFYLG PRTKAISVLN KAFPELGIQK HDFKEMSWIE SILFFSELDN TSNVSLLKQR YFEKKSYFKA
301: KSDYVKTPIS MDGIMTTLDV LEKEPKGHII LDPYGGAMER ISEDAIAFPH RKGNLFGIQY LVEWGKKDNS ITKSNAYIEW IREFYNTMAP FVSSAPRAAY
401: VNYIDLDLGV IDNLLINTNA GHAIERARVW GQKYFLNNYD RLVKAKTIID PLNVFRNQQG IPPMFATIQE RNYSIE

Best Arabidopsis Sequence Match ( AT2G34790.1 )
(BLAST)

001: MAFAISKRNA TLFLVTLLLI SVPLSSSTLQ QDFVKCLVDN SDVSFPITAS FFSPDQNATL FKEELESTAQ NLRYLTPSNP KPVFIFEPLY ETHVQAAVVC
101: AKKLQLHLRL RSGGHDYEGL SFVAEDETPF VIVDLSKLRQ VDVDLDSNSA WAHAGATIGE VYYRIQEKSQ THGFPAGLCS SLGIGGHLVG GAYGSMMRKF
201: GLGADNVLDA RIVDANGQIL DRAAMGEDVF WAIRGGGGGS FGVILAWKIK LVPVPATVTV FTVTKTLEQD GTKVLYKWEQ IADKLDDDLF IRVIISPASK
301: TTKPGNRTIS MSYQAQFLGD SNRLLQVMQK SFPELGLTKK DCTEMSWIKS VMYIAGFPNS AAPEALLAGK SLFKNHFKAK SDFVKEPIPV EGLEGLWERF
401: LEEDSPLTIW NPYGGMMSRI SESEIPFPHR NGTLFKIQWL STWQDGKVSE ERHMKWIREM YSYMEQYVSK NPRQAYVNYR DLDLGTNEGE TDAREWGAKY
501: YKGNFERLVK IKGEFDPDNF FRHEQSVPTK IG

Arabidopsis Description

MEE23Berberine bridge enzyme-like 15 [Source:UniProtKB/Swiss-Prot;Acc:O64743]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.