Factsheet for PGSC0003DMT400043091

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 8
plasma membrane 5
golgi 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054391	Potato	cytosol, nucleus, peroxisome	50.09	61.48
PGSC0003DMT400046308	Potato	extracellular	58.98	57.35
PGSC0003DMT400054571	Potato	cytosol	39.89	51.97
PGSC0003DMT400054564	Potato	cytosol, plastid	48.02	51.42
PGSC0003DMT400054385	Potato	plastid	48.02	51.31
PGSC0003DMT400054560	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.97	50.96
PGSC0003DMT400080468	Potato	vacuole	50.28	50.38
PGSC0003DMT400054387	Potato	plasma membrane, vacuole	50.47	50.38
PGSC0003DMT400080465	Potato	cytosol	38.37	50.0
PGSC0003DMT400080467	Potato	vacuole	50.85	50.0
PGSC0003DMT400054386	Potato	vacuole	49.72	49.44
PGSC0003DMT400054574	Potato	mitochondrion, peroxisome	46.5	47.95
GSMUA_Achr3P23450_001	Banana	plasma membrane, vacuole	40.45	47.77
PGSC0003DMT400054393	Potato	plasma membrane, vacuole	47.64	47.19
PGSC0003DMT400089776	Potato	golgi, vacuole	48.58	46.98
PGSC0003DMT400062414	Potato	plasma membrane, vacuole	48.96	46.75
TraesCS7A01G354100.1	Wheat	vacuole	37.62	45.75
TraesCS1D01G443200.1	Wheat	cytosol	27.03	45.25
TraesCS7D01G368500.1	Wheat	plasma membrane, vacuole	43.29	44.21
GSMUA_Achr3P23470_001	Banana	extracellular, plasma membrane, vacuole	34.59	44.1
TraesCS2B01G172300.1	Wheat	vacuole	44.05	44.05
TraesCS2D01G151500.1	Wheat	vacuole	43.86	43.86
TraesCS2B01G017300.1	Wheat	plastid	33.84	43.77
EER89909	Sorghum	extracellular, plasma membrane, vacuole	43.29	43.54
PGSC0003DMT400086243	Potato	vacuole	43.29	43.54
Zm00001d046318_P001	Maize	vacuole	43.67	43.5
TraesCS1B01G469800.1	Wheat	vacuole	44.23	43.49
TraesCS1A01G433900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.05	43.39
KXG20146	Sorghum	extracellular	43.67	43.34
TraesCS1D01G338700.1	Wheat	plasma membrane	43.86	43.28
TraesCS5D01G268800.1	Wheat	vacuole	42.91	43.24
TraesCS7B01G273600.1	Wheat	vacuole	42.16	43.13
Zm00001d037005_P001	Maize	vacuole	42.72	43.13
TraesCS7D01G369200.1	Wheat	extracellular, vacuole	43.1	43.1
TraesCS7A01G354000.1	Wheat	vacuole	41.97	42.94
Zm00001d046322_P001	Maize	extracellular	43.1	42.94
EER89910	Sorghum	vacuole	42.91	42.91
TraesCS5A01G261400.1	Wheat	vacuole	42.53	42.86
TraesCS7D01G393900.1	Wheat	vacuole	42.34	42.83
Os06t0548100-00	Rice	golgi	43.29	42.8
Os06t0549900-01	Rice	extracellular	42.72	42.8
TraesCS1D01G433600.1	Wheat	vacuole	43.67	42.78
TraesCS1B01G456900.1	Wheat	vacuole	40.26	42.77
TraesCS7D01G368700.1	Wheat	unclear	41.59	42.55
TraesCS1A01G424100.1	Wheat	vacuole	41.02	42.55
TraesCS7B01G273500.1	Wheat	plastid	43.67	42.54
TraesCS7B01G273700.1	Wheat	vacuole	41.78	42.5
TraesCS4B01G391900.1	Wheat	vacuole	41.02	42.38
TraesCS7D01G368800.1	Wheat	vacuole	41.59	42.31
HORVU7Hr1G089160.3	Barley	vacuole	41.97	42.29
TraesCS7A01G400100.1	Wheat	unclear	41.97	42.29
Os06t0549633-00	Rice	vacuole	42.16	42.23
TraesCS7D01G124500.1	Wheat	plasma membrane, vacuole	41.4	42.12
HORVU7Hr1G089270.1	Barley	vacuole	42.34	42.11
TraesCS2A01G052700.1	Wheat	extracellular, plasma membrane, plastid, vacuole	41.59	42.06
TraesCS5A01G555000.1	Wheat	plasma membrane, vacuole	41.02	42.05
Zm00001d046319_P001	Maize	vacuole	41.78	42.02
TraesCS7A01G353900.1	Wheat	vacuole	41.21	42.0
KXG20949	Sorghum	vacuole	42.91	41.96
TraesCSU01G034600.1	Wheat	vacuole	40.83	41.94
TraesCS2D01G052300.1	Wheat	plastid	41.78	41.94
TraesCS7D01G369000.1	Wheat	extracellular, vacuole	41.21	41.92
TraesCS7A01G353700.1	Wheat	extracellular, vacuole	42.16	41.92
PGSC0003DMT400009569	Potato	cytosol	37.62	41.81
HORVU2Hr1G000540.1	Barley	golgi, vacuole	42.91	41.8
HORVU1Hr1G092680.1	Barley	golgi, vacuole	42.34	41.79
TraesCS7A01G126600.1	Wheat	vacuole	41.02	41.73
TraesCS2D01G006000.1	Wheat	plastid	39.89	41.7
HORVU2Hr1G008330.1	Barley	extracellular, plasma membrane, vacuole	41.78	41.7
Os06t0549300-00	Rice	extracellular	41.21	41.68
TraesCS2A01G051500.1	Wheat	peroxisome	26.84	41.64
KXG20147	Sorghum	vacuole	42.16	41.6
TraesCS7A01G353600.1	Wheat	cytosol, nucleus, peroxisome	17.2	41.55
TraesCS2A01G052600.1	Wheat	vacuole	41.78	41.54
TraesCS7A01G353800.1	Wheat	vacuole	40.83	41.54
HORVU7Hr1G093940.1	Barley	vacuole	41.59	41.51
TraesCS4B01G358600.1	Wheat	golgi	41.02	41.49
HORVU2Hr1G008270.1	Barley	peroxisome	24.39	41.48
HORVU7Hr1G089280.1	Barley	mitochondrion, peroxisome, plasma membrane	42.16	41.45
TraesCS2B01G066900.1	Wheat	nucleus, unclear	41.21	41.37
TraesCS2B01G572400.1	Wheat	unclear	41.4	41.32
TraesCS2B01G016900.1	Wheat	vacuole	40.45	41.31
EER89907	Sorghum	plasma membrane, vacuole	41.02	41.25
TraesCS2A01G542600.1	Wheat	vacuole	41.4	41.24
HORVU2Hr1G122590.1	Barley	vacuole	41.59	41.12
TraesCS2D01G052700.1	Wheat	unclear	41.02	41.1
TraesCS5D01G309100.1	Wheat	vacuole	40.45	41.07
Os06t0548200-01	Rice	extracellular	41.4	41.01
PGSC0003DMT400057680	Potato	extracellular, plasma membrane, vacuole	41.59	40.97
TraesCS7B01G273900.1	Wheat	vacuole	40.26	40.96
PGSC0003DMT400012979	Potato	cytosol	30.81	40.95
HORVU4Hr1G017270.1	Barley	vacuole	41.97	40.88
HORVU2Hr1G008300.1	Barley	plastid	40.64	40.87
HORVU2Hr1G000530.1	Barley	plasma membrane, vacuole	33.84	40.87
Os06t0548800-01	Rice	extracellular	41.02	40.87
TraesCS7A01G484600.1	Wheat	extracellular, plasma membrane, vacuole	40.26	40.8
TraesCS2A01G052900.1	Wheat	unclear	40.64	40.72
TraesCS2B01G066400.1	Wheat	plastid	40.64	40.72
TraesCS2B01G066800.1	Wheat	vacuole	40.64	40.72
Zm00001d037008_P001	Maize	golgi, vacuole	39.32	40.7
TraesCS4D01G101000.1	Wheat	golgi	41.78	40.7
Os06t0549600-01	Rice	extracellular	40.45	40.68
EES13185	Sorghum	vacuole	41.97	40.66
PGSC0003DMT400036039	Potato	extracellular, plasma membrane, vacuole	42.53	40.61
TraesCS7B01G388200.1	Wheat	extracellular, plasma membrane, vacuole	40.08	40.61
TraesCS2A01G005700.1	Wheat	vacuole	38.0	40.61
TraesCS4A01G212100.1	Wheat	vacuole	41.59	40.59
TraesCS5B01G302700.1	Wheat	vacuole	39.89	40.58
TraesCS2A01G052800.1	Wheat	plastid, vacuole	40.26	40.57
TraesCS2D01G052500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	40.45	40.53
TraesCS3B01G132200.1	Wheat	extracellular, plasma membrane, vacuole	40.45	40.53
PGSC0003DMT400057528	Potato	extracellular	41.21	40.52
EER89908	Sorghum	plasma membrane, vacuole	41.21	40.45
TraesCS7B01G026000.1	Wheat	cytosol	25.33	40.36
KXG28418	Sorghum	vacuole	40.26	40.34
TraesCS7B01G273800.1	Wheat	plasma membrane	39.7	40.31
TraesCS7D01G472000.1	Wheat	vacuole	39.7	40.23
TraesCS3D01G113700.1	Wheat	extracellular, plasma membrane, vacuole	40.08	40.23
KXG26140	Sorghum	plasma membrane	40.64	40.19
TraesCS7D01G368900.1	Wheat	cytosol, peroxisome, plasma membrane	18.15	40.17
Zm00001d049169_P001	Maize	vacuole	40.08	40.15
GSMUA_Achr3P23440_001	Banana	extracellular, plasma membrane	38.94	40.08
HORVU7Hr1G089190.1	Barley	vacuole	39.7	40.0
TraesCS4B01G104000.1	Wheat	vacuole	41.02	39.89
HORVU4Hr1G086520.1	Barley	plasma membrane, vacuole	38.94	39.85
TraesCS7D01G369100.1	Wheat	plasma membrane, vacuole	42.53	39.82
HORVU2Hr1G008310.1	Barley	golgi, vacuole	40.83	39.78
HORVU3Hr1G020240.1	Barley	extracellular, plasma membrane, vacuole	39.51	39.43
HORVU2Hr1G013930.1	Barley	golgi, vacuole	40.64	39.38
TraesCS3A01G111600.1	Wheat	vacuole	39.51	39.36
TraesCS2D01G052400.1	Wheat	vacuole	29.68	39.05
TraesCS2D01G543700.1	Wheat	unclear	41.4	39.04
TraesCS3B01G070000.1	Wheat	mitochondrion	20.79	39.01
Os02t0235900-01	Rice	plasma membrane, vacuole	41.59	38.8
TraesCS4B01G222500.1	Wheat	plasma membrane	41.4	38.69
PGSC0003DMT400057523	Potato	extracellular, golgi, vacuole	41.02	38.54
TraesCS4D01G223000.1	Wheat	plasma membrane	41.21	38.52
TraesCS2D01G126200.1	Wheat	plasma membrane, vacuole	41.78	38.43
TraesCS4A01G081300.1	Wheat	unclear	40.83	38.23
HORVU4Hr1G062830.1	Barley	mitochondrion, peroxisome, plasma membrane	41.97	38.21
TraesCS2B01G145300.1	Wheat	plasma membrane	41.21	38.11
Zm00001d016199_P001	Maize	mitochondrion	40.08	37.79
TraesCS2A01G123200.1	Wheat	plasma membrane, vacuole	40.83	37.7
HORVU2Hr1G021650.2	Barley	golgi, mitochondrion, plastid, vacuole	41.21	37.65
TraesCS2A01G123400.1	Wheat	plasma membrane, vacuole	40.26	36.66
TraesCS2D01G126400.1	Wheat	golgi, vacuole	40.08	36.61
Os11t0495950-00	Rice	plasma membrane, vacuole	37.24	36.48
KXG29886	Sorghum	mitochondrion	39.89	36.32
TraesCS2B01G145500.1	Wheat	vacuole	39.89	36.25
HORVU7Hr1G089210.1	Barley	mitochondrion	41.4	35.67
Zm00001d037009_P001	Maize	plasma membrane	39.51	35.67
KXG29885	Sorghum	plastid	32.14	33.93
HORVU7Hr1G089260.1	Barley	mitochondrion	30.06	32.72
HORVU7Hr1G026630.1	Barley	plastid	28.92	30.18

Protein Annotations

EntrezGene:102586155	Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	InterPro:BBE
InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660
GO:GO:0055114	GO:GO:0071949	InterPro:IPR016166	InterPro:IPR016167	UniProt:M1BE26	InterPro:Oxid_FAD_bind_N
PFAM:PF01565	PFAM:PF08031	EnsemblPlantsGene:PGSC0003DMG400016716	PGSC:PGSC0003DMG400016716	EnsemblPlants:PGSC0003DMT400043091	PFscan:PS51387
PANTHER:PTHR32448	PANTHER:PTHR32448:SF25	SUPFAM:SSF56176	SignalP:SignalP-noTM	UniParc:UPI000295C016	RefSeq:XP_006348174.1
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016716]

Coordinates

chr2:+:36880091..36881680

Molecular Weight (calculated)

60345.5 Da

IEP (calculated)

8.839

GRAVY (calculated)

-0.211

Length

529 amino acids

Sequence
(BLAST)

001: MENSLFLTFS SFLFVIHFVP LAASTPSYLS FLQCLSKHSH PSDHILSRVY TPNNSSYKSV LQHYIRNQRF NRSTTPKPDI IFTPLQESHV QVAVTCCRKT
101: DKYLKIRSGG HDYEGISYVS NISFVLLDMS NLRSIDVDIQ NETAWVQAGA LLGELYYRIW EKSKVHAFPA GVCPTVGVGG HITGGGYGNL LRKYGLSVDN
201: LIDAHIVDVH GRILNRGSMG EDLFWAIRGG CGASFGVISA YKLRLVKVPD VVTVFRVVRT LEETAIDIVY WWQFIAEKID SNLFIRLALK PIDEKQKGTK
301: TITATFVALF LGDSRELLSI MDRDFPQLGL HIEDCKEMSW IESELFWASF PNGTLPDALL NRKPGAKFLK RKSDYLQKPI PKDKLKSIFD KMIELGDTEL
401: VFNQYGGRMS EIPEWETPFP HRAGNIFKIQ YAANWGKEGK EAENFYINQT RVLYNYMTPF VSKSPRCAYL NYRDLDIGVN HNGNNRYIEG RVYGLKYFKD
501: NFNKLVKVKT LVDPDNFFWN EQSIPPLAA

Best Arabidopsis Sequence Match ( AT4G20840.1 )
(BLAST)

001: MIATQTFVSV FFFVFFLVSL PFFSSAAPPS SDSIYESFVQ CFSDKTKSPQ AQITDNVFSR TNPSFSSVLR AYIRNGRFNT SSTPKPAIIV TPRSDIHVSA
101: AVTCSKSLNF LLKIRSGGHD YEGLSYISDK PFFILDMSNL RDVSVDIADQ SAWISAGATL GEVYYRIWEK SKVHGFPAGV CPTVGVGGHI SGGGYGNMLR
201: KFGLSVDNLI DAKIVDVNGQ ILDRKSMGED LFWAISGGGG ASFGVVLGYK VKLVPVPETV TVFRVEKYMD SGAVDMVHKW QSVGPKTDRN LFLRMLIQPV
301: TRKKVKTVRA TVVALFLGRA EEVVALLGKE FPELSLKKEN CSEMTWFQSA LWWDNRVNPT QIDPKVFLDR NLDRANFGKR KSDYVASEIP RDGIESLFKK
401: MTELGKIGLV FNPYGGKMAE VTVNATPFPH RSKLFKIQYS VTWQENSVEI EKGFLNQANV LYSFMTGFVS KNPRNAYLNY RDVDIGVNDH GTNSYEEGEV
501: YGRKYFGDNF DRLVKVKTAA DPDNFFRNEQ SIPTVLSKA

Arabidopsis Description

Berberine bridge enzyme-like 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.