Factsheet for PGSC0003DMT400054571

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
endoplasmic reticulum 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054560	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.0	74.93
PGSC0003DMT400054385	Potato	plastid	87.44	71.72
PGSC0003DMT400054574	Potato	mitochondrion, peroxisome	84.48	66.86
PGSC0003DMT400054564	Potato	cytosol, plastid	80.54	66.19
PGSC0003DMT400054387	Potato	plasma membrane, vacuole	83.25	63.77
PGSC0003DMT400054386	Potato	vacuole	83.5	63.72
Solyc02g070180.1.1	Tomato	plasma membrane, vacuole	84.48	63.52
PGSC0003DMT400080465	Potato	cytosol	52.96	52.96
PGSC0003DMT400054391	Potato	cytosol, nucleus, peroxisome	52.46	49.42
TraesCS1D01G443200.1	Wheat	cytosol	35.96	46.2
PGSC0003DMT400080468	Potato	vacuole	59.11	45.45
PGSC0003DMT400080467	Potato	vacuole	59.36	44.8
TraesCS7A01G353600.1	Wheat	cytosol, nucleus, peroxisome	23.89	44.29
KRH58389	Soybean	nucleus	57.14	43.28
KRH58388	Soybean	vacuole	57.39	42.6
PGSC0003DMT400012979	Potato	cytosol	41.63	42.46
KRH58344	Soybean	vacuole	55.42	42.45
KRH42266	Soybean	vacuole	55.91	42.12
TraesCS7B01G026000.1	Wheat	cytosol	33.25	40.66
KRH58387	Soybean	plastid, vacuole	54.68	40.44
TraesCS3B01G070000.1	Wheat	mitochondrion	27.83	40.07
PGSC0003DMT400043091	Potato	extracellular	51.97	39.89
TraesCS2A01G051500.1	Wheat	peroxisome	33.5	39.88
PGSC0003DMT400009569	Potato	cytosol	46.55	39.71
HORVU2Hr1G008270.1	Barley	peroxisome	30.3	39.55
PGSC0003DMT400054393	Potato	plasma membrane, vacuole	51.72	39.33
GSMUA_Achr3P23450_001	Banana	plasma membrane, vacuole	42.86	38.84
TraesCS7D01G368900.1	Wheat	cytosol, peroxisome, plasma membrane	22.66	38.49
PGSC0003DMT400086243	Potato	vacuole	49.75	38.4
PGSC0003DMT400062414	Potato	plasma membrane, vacuole	51.97	38.09
PGSC0003DMT400046308	Potato	extracellular	49.51	36.95
PGSC0003DMT400057680	Potato	extracellular, plasma membrane, vacuole	48.77	36.87
KXG20146	Sorghum	extracellular	48.03	36.59
TraesCS7A01G354100.1	Wheat	vacuole	39.16	36.55
PGSC0003DMT400057528	Potato	extracellular	48.03	36.25
PGSC0003DMT400089776	Potato	golgi, vacuole	48.77	36.2
GSMUA_Achr3P23470_001	Banana	extracellular, plasma membrane, vacuole	36.95	36.14
Zm00001d046322_P001	Maize	extracellular	47.04	35.97
PGSC0003DMT400036039	Potato	extracellular, plasma membrane, vacuole	49.01	35.92
TraesCS2B01G172300.1	Wheat	vacuole	46.8	35.92
TraesCS1D01G338700.1	Wheat	plasma membrane	46.8	35.45
TraesCS2D01G151500.1	Wheat	vacuole	46.06	35.35
TraesCS7D01G369200.1	Wheat	extracellular, vacuole	46.06	35.35
HORVU7Hr1G089270.1	Barley	vacuole	46.31	35.34
TraesCS1A01G433900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.55	35.2
TraesCS7A01G353700.1	Wheat	extracellular, vacuole	46.06	35.15
TraesCS1B01G469800.1	Wheat	vacuole	46.55	35.13
TraesCS7D01G368500.1	Wheat	plasma membrane, vacuole	44.58	34.94
HORVU7Hr1G089280.1	Barley	mitochondrion, peroxisome, plasma membrane	45.81	34.57
TraesCS1D01G433600.1	Wheat	vacuole	45.81	34.44
HORVU1Hr1G092680.1	Barley	golgi, vacuole	45.32	34.33
Os06t0549633-00	Rice	vacuole	44.58	34.28
TraesCS5A01G261400.1	Wheat	vacuole	44.09	34.1
TraesCS5D01G268800.1	Wheat	vacuole	44.09	34.1
Zm00001d046319_P001	Maize	vacuole	44.09	34.03
Os06t0548100-00	Rice	golgi	44.83	34.02
Os06t0548800-01	Rice	extracellular	44.34	33.9
KXG20147	Sorghum	vacuole	44.58	33.77
TraesCS2B01G017300.1	Wheat	plastid	33.99	33.74
EER89907	Sorghum	plasma membrane, vacuole	43.6	33.65
TraesCS1B01G456900.1	Wheat	vacuole	41.13	33.53
Zm00001d046318_P001	Maize	vacuole	43.84	33.52
EER89910	Sorghum	vacuole	43.6	33.46
TraesCS7D01G369100.1	Wheat	plasma membrane, vacuole	46.55	33.45
PGSC0003DMT400057523	Potato	extracellular, golgi, vacuole	46.31	33.39
TraesCS1A01G424100.1	Wheat	vacuole	41.87	33.33
TraesCS7B01G273900.1	Wheat	vacuole	42.61	33.27
Os06t0548200-01	Rice	extracellular	43.6	33.15
TraesCS7B01G388200.1	Wheat	extracellular, plasma membrane, vacuole	42.61	33.14
TraesCS2D01G006000.1	Wheat	plastid	41.13	33.0
TraesCS7A01G484600.1	Wheat	extracellular, plasma membrane, vacuole	42.36	32.95
TraesCS7D01G472000.1	Wheat	vacuole	42.36	32.95
Zm00001d037005_P001	Maize	vacuole	42.36	32.82
TraesCS7B01G273800.1	Wheat	plasma membrane	42.12	32.82
Os06t0549900-01	Rice	extracellular	42.61	32.77
Os06t0549300-00	Rice	extracellular	42.12	32.7
TraesCS7A01G126600.1	Wheat	vacuole	41.87	32.69
TraesCS7A01G353800.1	Wheat	vacuole	41.87	32.69
TraesCS7A01G354000.1	Wheat	vacuole	41.63	32.69
TraesCS7D01G368700.1	Wheat	unclear	41.63	32.69
TraesCS7B01G273500.1	Wheat	plastid	43.6	32.6
KXG20949	Sorghum	vacuole	43.35	32.53
TraesCS7B01G273600.1	Wheat	vacuole	41.38	32.5
GSMUA_Achr3P23440_001	Banana	extracellular, plasma membrane	41.13	32.49
HORVU2Hr1G000540.1	Barley	golgi, vacuole	43.35	32.41
HORVU7Hr1G089160.3	Barley	vacuole	41.87	32.38
HORVU7Hr1G089190.1	Barley	vacuole	41.87	32.38
KXG26140	Sorghum	plasma membrane	42.61	32.34
EER89909	Sorghum	extracellular, plasma membrane, vacuole	41.87	32.32
Os06t0549600-01	Rice	extracellular	41.87	32.32
TraesCS7D01G124500.1	Wheat	plasma membrane, vacuole	41.38	32.31
TraesCS7D01G369000.1	Wheat	extracellular, vacuole	41.13	32.12
TraesCS2B01G572400.1	Wheat	unclear	41.87	32.08
TraesCS7A01G353900.1	Wheat	vacuole	40.89	31.98
TraesCS7D01G393900.1	Wheat	vacuole	41.13	31.93
TraesCS7B01G273700.1	Wheat	vacuole	40.89	31.92
TraesCS7D01G368800.1	Wheat	vacuole	40.89	31.92
EES13185	Sorghum	vacuole	42.86	31.87
TraesCS2B01G016900.1	Wheat	vacuole	40.64	31.85
HORVU2Hr1G008300.1	Barley	plastid	41.13	31.75
EER89908	Sorghum	plasma membrane, vacuole	42.12	31.73
TraesCS2D01G052300.1	Wheat	plastid	41.13	31.69
TraesCS2B01G066400.1	Wheat	plastid	41.13	31.63
TraesCS7A01G400100.1	Wheat	unclear	40.89	31.62
TraesCS4B01G358600.1	Wheat	golgi	40.64	31.55
HORVU2Hr1G008330.1	Barley	extracellular, plasma membrane, vacuole	41.13	31.51
TraesCS5D01G309100.1	Wheat	vacuole	40.39	31.48
TraesCS4B01G391900.1	Wheat	vacuole	39.66	31.45
HORVU2Hr1G122590.1	Barley	vacuole	41.38	31.4
HORVU4Hr1G086520.1	Barley	plasma membrane, vacuole	39.9	31.33
HORVU3Hr1G020240.1	Barley	extracellular, plasma membrane, vacuole	40.89	31.32
HORVU2Hr1G013930.1	Barley	golgi, vacuole	42.12	31.32
HORVU4Hr1G017270.1	Barley	vacuole	41.87	31.31
TraesCS2B01G145300.1	Wheat	plasma membrane	44.09	31.29
TraesCS2A01G052700.1	Wheat	extracellular, plasma membrane, plastid, vacuole	40.15	31.17
HORVU7Hr1G093940.1	Barley	vacuole	40.64	31.13
TraesCS2B01G066900.1	Wheat	nucleus, unclear	40.39	31.12
TraesCS2A01G542600.1	Wheat	vacuole	40.64	31.07
TraesCS2A01G052900.1	Wheat	unclear	40.39	31.06
TraesCS2A01G052800.1	Wheat	plastid, vacuole	39.9	30.86
TraesCS2A01G052600.1	Wheat	vacuole	40.39	30.83
TraesCS5A01G555000.1	Wheat	plasma membrane, vacuole	39.16	30.81
TraesCS2B01G066800.1	Wheat	vacuole	39.9	30.68
TraesCS2D01G052500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	39.9	30.68
TraesCS2D01G052700.1	Wheat	unclear	39.9	30.68
TraesCS3B01G132200.1	Wheat	extracellular, plasma membrane, vacuole	39.9	30.68
TraesCS2D01G543700.1	Wheat	unclear	42.36	30.66
TraesCS3D01G113700.1	Wheat	extracellular, plasma membrane, vacuole	39.66	30.55
TraesCS2A01G123200.1	Wheat	plasma membrane, vacuole	43.1	30.54
Zm00001d037008_P001	Maize	golgi, vacuole	38.42	30.53
KXG28418	Sorghum	vacuole	39.66	30.49
Zm00001d049169_P001	Maize	vacuole	39.66	30.49
TraesCSU01G034600.1	Wheat	vacuole	38.67	30.49
TraesCS2D01G126200.1	Wheat	plasma membrane, vacuole	43.1	30.43
HORVU2Hr1G008310.1	Barley	golgi, vacuole	40.64	30.39
TraesCS3A01G111600.1	Wheat	vacuole	39.66	30.32
TraesCS2A01G005700.1	Wheat	vacuole	36.95	30.3
TraesCS5B01G302700.1	Wheat	vacuole	38.67	30.19
Os02t0235900-01	Rice	plasma membrane, vacuole	42.12	30.16
TraesCS4B01G104000.1	Wheat	vacuole	40.39	30.15
TraesCS4A01G212100.1	Wheat	vacuole	40.15	30.07
TraesCS2A01G123400.1	Wheat	plasma membrane, vacuole	42.86	29.95
HORVU2Hr1G021650.2	Barley	golgi, mitochondrion, plastid, vacuole	42.61	29.88
TraesCS4B01G222500.1	Wheat	plasma membrane	41.63	29.86
TraesCS4D01G101000.1	Wheat	golgi	39.9	29.83
TraesCS2B01G145500.1	Wheat	vacuole	42.61	29.73
TraesCS2D01G126400.1	Wheat	golgi, vacuole	42.12	29.53
TraesCS4A01G081300.1	Wheat	unclear	40.89	29.38
TraesCS4D01G223000.1	Wheat	plasma membrane	40.64	29.15
HORVU4Hr1G062830.1	Barley	mitochondrion, peroxisome, plasma membrane	41.63	29.09
Zm00001d016199_P001	Maize	mitochondrion	40.15	29.06
HORVU7Hr1G026630.1	Barley	plastid	36.21	28.99
Os11t0495950-00	Rice	plasma membrane, vacuole	37.93	28.52
KXG29886	Sorghum	mitochondrion	40.39	28.23
Zm00001d037009_P001	Maize	plasma membrane	40.64	28.16
HORVU7Hr1G089210.1	Barley	mitochondrion	41.87	27.69
KXG29885	Sorghum	plastid	33.5	27.15
HORVU2Hr1G000530.1	Barley	plasma membrane, vacuole	28.57	26.48
TraesCS2D01G052400.1	Wheat	vacuole	25.12	25.37
HORVU7Hr1G089260.1	Barley	mitochondrion	26.85	22.43

Protein Annotations

Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	InterPro:BBE	InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	InterPro:IPR016166
UniProt:M1BWK2	InterPro:Oxid_FAD_bind_N	PFAM:PF01565	PFAM:PF08031	EnsemblPlantsGene:PGSC0003DMG400021178	PGSC:PGSC0003DMG400021178
EnsemblPlants:PGSC0003DMT400054571	PFscan:PS51387	PANTHER:PTHR32448	PANTHER:PTHR32448:SF30	SUPFAM:SSF56176	TMHMM:TMhelix
UniParc:UPI00029582A6	SEG:seg	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021178]

Coordinates

chr2:+:29267297..29268517

Molecular Weight (calculated)

46037.2 Da

IEP (calculated)

8.312

GRAVY (calculated)

-0.242

Length

406 amino acids

Sequence
(BLAST)

001: MDLRNLTSIS IDTKKKIAWI QAGATLGEVY YRIAEKSKKL AFVSGVSPVV GVGGHFSGGG YGMMSRKFGT ATDNIIDAKL IDANGRIQDR ESMGEDIFWA
101: IRGGGGTSFG LIISWKVKLL DIPEKVTVFN VPRTLEQNAT QLVYKWQHIA DKVDDNLLLR LFVRNSEFPF GGGQRAIYAF FTTMFVGGVD ELLHEMQHRF
201: PELGLVKDGC IEMSWIESIL FFANFPRGTS LDVLLDRTNQ IGFFKGKSDF VQRPISINGL EGIWKLLNQL LSENSGAELQ FSPYGGKLSD IAESEIPFPH
301: RAGNIFMIEY AVYWGEIENS QSNIAWIREL YEYMGKYVSK YPRAAYFNYR DLDLGMNNKG NTSYEQAKIW GEKYFKNNFD RLVKVKTKID PTNFFRNEQS
401: IPPQLS

Best Arabidopsis Sequence Match ( AT1G30760.1 )
(BLAST)

001: MAFVLMNNTN AFLVTLLLLS LSYIPLSFST IQQDFVMCLV DNSDASFPMD SSFFTHDLNA SSFKLALETS AQNLRYLMPS NPKPEFIFEP LYETHVQAAV
101: LCAKKLKLHL RLRSGGHDYE GLSYVSEMET AFVIVDLSKL RQISVDIESN SAWVHAGASI GEVYYRIQEK SKIHGFPAGL CTSLGIGGHI IGGAYGSMMR
201: KFGLGADNVL DARIVDADGK ILNRAAMGED VFWAIRGGGG GSFGVILAWK IKLVPVPEIV TVFTVTRTLE QDGTKLLYKW QQVADKLDED LFIRVIIQPT
301: SKTPKSKERT ISTSYQGQFL GDANRLLQVM QRSFPQLGLT KKDCLETSWI KSVMYIAGFP STAPSEALLD GKSLFKNYFK AKSDYVEEPI PVEGLEGLWE
401: KLLEEDSPLT IWNPYGGMMA KIPETETPFP HRSGTLFKIQ WLTLWQDGKT SEAKHMGWMR EMYSYMEQYV SKSPRSAYVN YRDLDLGMNG KGSDAREWGN
501: RYFKGNFERL VEIKAKFDPE NFFRHEQSIP TELE

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30760]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.