Factsheet for PGSC0003DMT400054564

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 4
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054560	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.15	84.57
PGSC0003DMT400054385	Potato	plastid	82.79	82.63
PGSC0003DMT400054571	Potato	cytosol	66.19	80.54
PGSC0003DMT400054386	Potato	vacuole	85.02	78.95
Solyc02g070170.1.1	Tomato	extracellular, vacuole	84.82	78.32
PGSC0003DMT400054387	Potato	plasma membrane, vacuole	80.57	75.09
PGSC0003DMT400054574	Potato	mitochondrion, peroxisome	73.08	70.37
PGSC0003DMT400080465	Potato	cytosol	47.17	57.39
PGSC0003DMT400080468	Potato	vacuole	56.48	52.84
KRH58389	Soybean	nucleus	56.68	52.24
PGSC0003DMT400080467	Potato	vacuole	56.88	52.23
PGSC0003DMT400054391	Potato	cytosol, nucleus, peroxisome	45.55	52.2
KRH58344	Soybean	vacuole	55.67	51.89
KRH42266	Soybean	vacuole	55.87	51.21
KRH58388	Soybean	vacuole	56.48	51.01
KRH58387	Soybean	plastid, vacuole	55.06	49.54
PGSC0003DMT400043091	Potato	extracellular	51.42	48.02
PGSC0003DMT400054393	Potato	plasma membrane, vacuole	51.42	47.57
GSMUA_Achr3P23450_001	Banana	plasma membrane, vacuole	42.91	47.32
TraesCS1D01G443200.1	Wheat	cytosol	29.76	46.52
PGSC0003DMT400062414	Potato	plasma membrane, vacuole	52.02	46.39
PGSC0003DMT400086243	Potato	vacuole	49.19	46.2
GSMUA_Achr3P23470_001	Banana	extracellular, plasma membrane, vacuole	38.46	45.78
TraesCS2B01G172300.1	Wheat	vacuole	47.98	44.8
TraesCS7A01G354100.1	Wheat	vacuole	38.66	43.91
PGSC0003DMT400046308	Potato	extracellular	48.18	43.75
TraesCS1D01G433600.1	Wheat	vacuole	47.37	43.33
TraesCS2D01G151500.1	Wheat	vacuole	46.36	43.29
TraesCS1A01G433900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.96	43.2
TraesCS1B01G469800.1	Wheat	vacuole	46.96	43.12
HORVU1Hr1G092680.1	Barley	golgi, vacuole	46.76	43.1
TraesCS1D01G338700.1	Wheat	plasma membrane	46.76	43.1
PGSC0003DMT400009569	Potato	cytosol	41.5	43.07
PGSC0003DMT400057680	Potato	extracellular, plasma membrane, vacuole	46.76	43.02
PGSC0003DMT400057528	Potato	extracellular	46.76	42.94
PGSC0003DMT400089776	Potato	golgi, vacuole	47.17	42.6
Zm00001d046322_P001	Maize	extracellular	45.75	42.56
TraesCS1B01G456900.1	Wheat	vacuole	42.71	42.37
TraesCS1A01G424100.1	Wheat	vacuole	43.72	42.35
TraesCS7D01G369200.1	Wheat	extracellular, vacuole	45.14	42.16
KXG20146	Sorghum	extracellular	45.34	42.03
TraesCS7A01G353600.1	Wheat	cytosol, nucleus, peroxisome	18.62	42.01
PGSC0003DMT400012979	Potato	cytosol	33.81	41.96
TraesCS7D01G368500.1	Wheat	plasma membrane, vacuole	43.72	41.7
PGSC0003DMT400036039	Potato	extracellular, plasma membrane, vacuole	46.56	41.52
Os06t0549633-00	Rice	vacuole	44.13	41.29
Zm00001d046319_P001	Maize	vacuole	43.93	41.25
TraesCS2B01G017300.1	Wheat	plastid	34.01	41.08
TraesCS5D01G268800.1	Wheat	vacuole	43.52	40.95
EER89910	Sorghum	vacuole	43.72	40.83
TraesCS2A01G051500.1	Wheat	peroxisome	28.14	40.76
TraesCS5A01G261400.1	Wheat	vacuole	43.32	40.76
HORVU7Hr1G089280.1	Barley	mitochondrion, peroxisome, plasma membrane	44.33	40.71
Os06t0548800-01	Rice	extracellular	43.72	40.68
Zm00001d046318_P001	Maize	vacuole	43.72	40.68
TraesCS7B01G026000.1	Wheat	cytosol	27.33	40.66
TraesCS7A01G353700.1	Wheat	extracellular, vacuole	43.72	40.6
Os06t0548100-00	Rice	golgi	43.93	40.56
KXG20949	Sorghum	vacuole	44.33	40.48
TraesCS7A01G354000.1	Wheat	vacuole	42.31	40.43
HORVU7Hr1G089270.1	Barley	vacuole	43.52	40.41
TraesCS7B01G273900.1	Wheat	vacuole	42.51	40.38
TraesCS7A01G484600.1	Wheat	extracellular, plasma membrane, vacuole	42.51	40.23
TraesCS7A01G126600.1	Wheat	vacuole	42.31	40.19
EER89909	Sorghum	extracellular, plasma membrane, vacuole	42.71	40.11
EER89907	Sorghum	plasma membrane, vacuole	42.51	39.92
TraesCS7B01G273800.1	Wheat	plasma membrane	42.11	39.92
Zm00001d037005_P001	Maize	vacuole	42.31	39.89
TraesCS7B01G388200.1	Wheat	extracellular, plasma membrane, vacuole	42.11	39.85
TraesCS7D01G368700.1	Wheat	unclear	41.7	39.85
TraesCS7A01G353800.1	Wheat	vacuole	41.9	39.81
TraesCS7D01G124500.1	Wheat	plasma membrane, vacuole	41.9	39.81
TraesCS7D01G369000.1	Wheat	extracellular, vacuole	41.9	39.81
TraesCS7B01G273600.1	Wheat	vacuole	41.5	39.65
HORVU7Hr1G089190.1	Barley	vacuole	42.11	39.62
PGSC0003DMT400057523	Potato	extracellular, golgi, vacuole	45.14	39.61
TraesCS7A01G353900.1	Wheat	vacuole	41.5	39.5
GSMUA_Achr3P23440_001	Banana	extracellular, plasma membrane	41.09	39.49
TraesCS2D01G052300.1	Wheat	plastid	42.11	39.47
TraesCS7D01G472000.1	Wheat	vacuole	41.7	39.46
TraesCS7B01G273700.1	Wheat	vacuole	41.5	39.42
TraesCS7D01G368800.1	Wheat	vacuole	41.5	39.42
TraesCS7B01G273500.1	Wheat	plastid	43.32	39.41
HORVU2Hr1G008300.1	Barley	plastid	41.9	39.35
TraesCS2D01G006000.1	Wheat	plastid	40.28	39.33
HORVU7Hr1G089160.3	Barley	vacuole	41.7	39.24
HORVU2Hr1G008270.1	Barley	peroxisome	24.7	39.23
Os06t0549900-01	Rice	extracellular	41.9	39.2
TraesCS2A01G052700.1	Wheat	extracellular, plasma membrane, plastid, vacuole	41.5	39.2
Os06t0549600-01	Rice	extracellular	41.7	39.16
TraesCS2B01G066400.1	Wheat	plastid	41.7	39.02
TraesCS5D01G309100.1	Wheat	vacuole	41.09	38.96
TraesCS7D01G368900.1	Wheat	cytosol, peroxisome, plasma membrane	18.83	38.91
HORVU2Hr1G008330.1	Barley	extracellular, plasma membrane, vacuole	41.7	38.87
EES13185	Sorghum	vacuole	42.91	38.83
TraesCS4B01G358600.1	Wheat	golgi	41.09	38.81
TraesCS3B01G070000.1	Wheat	mitochondrion	22.06	38.65
TraesCS2A01G052900.1	Wheat	unclear	41.3	38.64
Os06t0549300-00	Rice	extracellular	40.89	38.62
KXG20147	Sorghum	vacuole	41.9	38.62
TraesCS7D01G369100.1	Wheat	plasma membrane, vacuole	44.13	38.58
HORVU4Hr1G086520.1	Barley	plasma membrane, vacuole	40.28	38.49
HORVU4Hr1G017270.1	Barley	vacuole	42.31	38.49
TraesCS2A01G052600.1	Wheat	vacuole	41.3	38.35
TraesCS2B01G066900.1	Wheat	nucleus, unclear	40.89	38.33
KXG26140	Sorghum	plasma membrane	41.5	38.32
HORVU2Hr1G000540.1	Barley	golgi, vacuole	42.11	38.31
TraesCS2A01G052800.1	Wheat	plastid, vacuole	40.69	38.29
TraesCS7A01G400100.1	Wheat	unclear	40.69	38.29
TraesCS2D01G052700.1	Wheat	unclear	40.89	38.26
TraesCS7D01G393900.1	Wheat	vacuole	40.49	38.24
TraesCS2B01G016900.1	Wheat	vacuole	40.08	38.22
HORVU2Hr1G122590.1	Barley	vacuole	41.3	38.13
TraesCS2B01G572400.1	Wheat	unclear	40.89	38.11
TraesCS5B01G302700.1	Wheat	vacuole	39.88	37.88
TraesCS2D01G052500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	40.49	37.88
EER89908	Sorghum	plasma membrane, vacuole	41.3	37.85
TraesCS2B01G066800.1	Wheat	vacuole	40.28	37.69
TraesCS2A01G542600.1	Wheat	vacuole	40.49	37.66
Os06t0548200-01	Rice	extracellular	40.69	37.64
TraesCS5A01G555000.1	Wheat	plasma membrane, vacuole	39.27	37.6
TraesCS2B01G145300.1	Wheat	plasma membrane	43.32	37.41
HORVU7Hr1G093940.1	Barley	vacuole	40.08	37.36
TraesCS4B01G391900.1	Wheat	vacuole	38.66	37.3
TraesCS4A01G212100.1	Wheat	vacuole	40.89	37.27
HORVU2Hr1G008310.1	Barley	golgi, vacuole	40.89	37.2
TraesCSU01G034600.1	Wheat	vacuole	38.66	37.09
TraesCS4D01G101000.1	Wheat	golgi	40.69	37.02
HORVU2Hr1G013930.1	Barley	golgi, vacuole	40.89	37.0
TraesCS4B01G104000.1	Wheat	vacuole	40.69	36.95
TraesCS4A01G081300.1	Wheat	unclear	41.9	36.64
TraesCS4B01G222500.1	Wheat	plasma membrane	41.9	36.57
TraesCS4D01G223000.1	Wheat	plasma membrane	41.9	36.57
TraesCS2A01G005700.1	Wheat	vacuole	36.64	36.57
TraesCS2D01G126200.1	Wheat	plasma membrane, vacuole	42.51	36.52
TraesCS2A01G123200.1	Wheat	plasma membrane, vacuole	42.31	36.47
Zm00001d037008_P001	Maize	golgi, vacuole	37.65	36.4
HORVU2Hr1G021650.2	Barley	golgi, mitochondrion, plastid, vacuole	42.51	36.27
HORVU3Hr1G020240.1	Barley	extracellular, plasma membrane, vacuole	38.87	36.23
TraesCS2D01G543700.1	Wheat	unclear	41.09	36.19
KXG28418	Sorghum	vacuole	38.66	36.17
Os02t0235900-01	Rice	plasma membrane, vacuole	41.5	36.16
TraesCS3B01G132200.1	Wheat	extracellular, plasma membrane, vacuole	38.46	35.98
Zm00001d049169_P001	Maize	vacuole	38.46	35.98
TraesCS3D01G113700.1	Wheat	extracellular, plasma membrane, vacuole	38.26	35.86
TraesCS3A01G111600.1	Wheat	vacuole	38.26	35.59
Zm00001d016199_P001	Maize	mitochondrion	40.28	35.47
HORVU4Hr1G062830.1	Barley	mitochondrion, peroxisome, plasma membrane	41.7	35.46
TraesCS2D01G052400.1	Wheat	vacuole	28.74	35.32
HORVU2Hr1G000530.1	Barley	plasma membrane, vacuole	30.97	34.93
HORVU7Hr1G089210.1	Barley	mitochondrion	43.12	34.69
KXG29886	Sorghum	mitochondrion	40.69	34.6
TraesCS2A01G123400.1	Wheat	plasma membrane, vacuole	40.49	34.42
TraesCS2B01G145500.1	Wheat	vacuole	40.49	34.36
TraesCS2D01G126400.1	Wheat	golgi, vacuole	40.08	34.2
Os11t0495950-00	Rice	plasma membrane, vacuole	37.25	34.07
KXG29885	Sorghum	plastid	34.21	33.73
Zm00001d037009_P001	Maize	plasma membrane	38.66	32.59
HORVU7Hr1G026630.1	Barley	plastid	32.19	31.36
HORVU7Hr1G089260.1	Barley	mitochondrion	30.16	30.66

Protein Annotations

Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	InterPro:BBE	InterPro:FAD-bd_2
InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114
GO:GO:0071949	InterPro:IPR016166	InterPro:IPR016167	UniProt:M1BWK0	InterPro:Oxid_FAD_bind_N	PFAM:PF01565
PFAM:PF08031	EnsemblPlantsGene:PGSC0003DMG400021176	PGSC:PGSC0003DMG400021176	EnsemblPlants:PGSC0003DMT400054564	PFscan:PS51387	PANTHER:PTHR32448
PANTHER:PTHR32448:SF30	SUPFAM:SSF56176	UniParc:UPI0002962204	SEG:seg	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021176]

Coordinates

chr2:+:29354982..29356466

Molecular Weight (calculated)

55952.6 Da

IEP (calculated)

8.619

GRAVY (calculated)

-0.375

Length

494 amino acids

Sequence
(BLAST)

001: MNSNSSQVIH TPKNSSYSTL LNSFSDNLRI TSDFKPSIIF TPTNESQIQV AIHCSKLHDL QIRIRSGGHD HEGLSYISET PFFIIDLRNL RSIAIDTNKK
101: TAWIQAGATI GELYYRIAEK SKKLTFPAGV CPNVGVGGHF SGGGYGMLAR KFGTAADNII DAKLIDANGQ IKDRESMGED HFWAIRGGGG TSFGLIISWK
201: VKLHDIPEKV TVFNVTRTLE QNATQLIYKW QHIADKVDDN LLLRLFLKSN VQSPFKPGQR SIQAIFSTMF VGGVDELLHE MQKSFPELEL MKEDCTEMSW
301: IESIIFFYGG FPNGTSPDAL LNWNTTSNLH IYFKGKSDYV QHPISIKGLE GIWKLYNQLG ENTGVELQVS PYGGKLSDIS ESETPFPHRA GNIFMIEYAV
401: YWIKMEDSKR SIDWSQKIYT YLGKYVSKSP RAAYFNYRDL DLGMNNKGNT SYEQAKIWGE KYFKNNFDRL VKVKTKIDPT NFFRNEQSIP PLLS

Best Arabidopsis Sequence Match ( AT1G30760.1 )
(BLAST)

001: MAFVLMNNTN AFLVTLLLLS LSYIPLSFST IQQDFVMCLV DNSDASFPMD SSFFTHDLNA SSFKLALETS AQNLRYLMPS NPKPEFIFEP LYETHVQAAV
101: LCAKKLKLHL RLRSGGHDYE GLSYVSEMET AFVIVDLSKL RQISVDIESN SAWVHAGASI GEVYYRIQEK SKIHGFPAGL CTSLGIGGHI IGGAYGSMMR
201: KFGLGADNVL DARIVDADGK ILNRAAMGED VFWAIRGGGG GSFGVILAWK IKLVPVPEIV TVFTVTRTLE QDGTKLLYKW QQVADKLDED LFIRVIIQPT
301: SKTPKSKERT ISTSYQGQFL GDANRLLQVM QRSFPQLGLT KKDCLETSWI KSVMYIAGFP STAPSEALLD GKSLFKNYFK AKSDYVEEPI PVEGLEGLWE
401: KLLEEDSPLT IWNPYGGMMA KIPETETPFP HRSGTLFKIQ WLTLWQDGKT SEAKHMGWMR EMYSYMEQYV SKSPRSAYVN YRDLDLGMNG KGSDAREWGN
501: RYFKGNFERL VEIKAKFDPE NFFRHEQSIP TELE

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30760]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.